PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma181g00350.1
Common NameZOSMA_181G00350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 302aa    MW: 35054.4 Da    PI: 7.1249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma181g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-15180268187
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+l++sdv+++gr++lpk+  e +    + +k  ++ l ++   +  +W++k+++  ++ks++yvl+ ++ eFvk n+Lk+gDf+ F+  +
  Zosma181g00350.1 180 FQKELKNSDVSNLGRIILPKRESEGNlpylM-VK-DGIYLNIKElFNTTVWRMKYRFwpNNKSRMYVLE-NTGEFVKVNELKSGDFISFY--Q 267
                       99*********************99999853.33.5667888885566*******9989999999**99.********************..4 PP

                       S CS
                B3  87 r 87 
                       +
  Zosma181g00350.1 268 D 268
                       4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-19178278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-22178278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-19178279No hitNo description
SMARTSM010191.4E-13180281IPR003340B3 DNA binding domain
PROSITE profilePS508639.051180281IPR003340B3 DNA binding domain
PfamPF023626.1E-12180271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDKSTTSNNP PDPLDCNTFL PPPVPQPFAN IDGFGADHTI YQHQRQYQVE QPNVYLYPNI  60
SMENVAGVDP QYYYNNSNIS NNGVMWPLNN RILDESRTRM QQQEQQRQEH QLEQLQRQIE  120
KLQKLQKEQD QLHSSGTSYH ALFPMTQPNS SIGITLQFSP YTQDFSLFPS LVHLGYKFLF  180
QKELKNSDVS NLGRIILPKR ESEGNLPYLM VKDGIYLNIK ELFNTTVWRM KYRFWPNNKS  240
RMYVLENTGE FVKVNELKSG DFISFYQDIN SQLYICCRNV DKLLQETRSV PTANAGNRSS  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-3417727610109B3 domain-containing transcription factor LEC2
6j9c_D4e-3417727610109B3 domain-containing transcription factor LEC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PT290.0A0A0K9PT29_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-36B3 family protein