PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma181g00320.1
Common NameZOSMA_181G00320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 348aa    MW: 37716 Da    PI: 8.6239
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma181g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.23.7e-3851111262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       +++ lkcprC+s+ntkfCyynnysl+qPr++CkaC+ryWt+GG+lrnvPvGgg+rknk+++
  Zosma181g00320.1  51 AHQPLKCPRCESSNTKFCYYNNYSLTQPRHLCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 111
                       57899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2450104IPR003851Zinc finger, Dof-type
PfamPF027016.4E-3353109IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.88255109IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105793IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVLMPGGNRN RIGYTNHQGL SATTTTTART ADGANSISTV GGALIGTSTQ AHQPLKCPRC  60
ESSNTKFCYY NNYSLTQPRH LCKACKRYWT RGGTLRNVPV GGGCRKNKRV KRSSSSFITA  120
TAANTTTVTA MVSDPNLFPN HVSTLSLPPT YSSCAMDPIF YGNSTGIDFP TTYPSSFLKK  180
LNHTTVNSYN PINSNLTSMG LCFPINAALP THQDCMTHPP NHLQFQQTDS SNSLFHDFSL  240
LGTSSFTTLR HPKTSINSTG WSANDRNIQA PVASGASDLR NFDGVKEEEE GRSIGVLDWQ  300
IQYDGDLFQN LNAVEGNSLY WNVNPLSGIS NTWPELPTAA TANHSVT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PT150.0A0A0K9PT15_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.28e-30Dof family protein