PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma181g00310.1
Common NameZOSMA_181G00310
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 234aa    MW: 25981.1 Da    PI: 9.0011
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma181g00310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.59.3e-364096460
            zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      +  kcprCds+ntkfCyynnyslsqPryfCkaC+ryWtkGG lrnvP Ggg  knk+
  Zosma181g00310.1 40 EPHKCPRCDSENTKFCYYNNYSLSQPRYFCKACKRYWTKGGVLRNVPFGGGGGKNKR 96
                      6789************************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-194086IPR003851Zinc finger, Dof-type
PfamPF027011.6E-314196IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.5124296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVDRSKSSGQ LLRSMALPEH PDVAIEMEKN VKKRRQSPVE PHKCPRCDSE NTKFCYYNNY  60
SLSQPRYFCK ACKRYWTKGG VLRNVPFGGG GGKNKRGRKS DALMSTTTTA GYGYGYGYCM  120
DRQFTPLPAS LLTATLNHQL QHEMFFGNGN NLADGLAGIG NRSIFHDGLY GNQEQYCSFT  180
NHGGIQEQTT LSTLPSSIFQ VEPPWIIGSS SSSSSTSYSS IPLYNQHGYC SFW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PQY51e-175A0A0K9PQY5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45610.14e-26Dof family protein