PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma17g00100.1
Common NameZOSMA_17G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 795aa    MW: 91098.7 Da    PI: 7.7819
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma17g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.5e-1840125291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fY +YA++vGF +r++ +k   ++g+ +   f Cs++ k++ ++k+   + r r++ rt+Ckak+++   +dg  +++kl+l+HnH+l+p
  Zosma17g00100.1  40 FYMNYASHVGFAIRRACTKIG-DDGKLKYFSFSCSRSRKPTYTSKN---SFRLRPSMRTDCKAKINIVVANDGSLVISKLRLDHNHPLTP 125
                      9*************9976665.9999****************9999...9999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1540125IPR004330FAR1 DNA binding domain
PfamPF105515.3E-30231323IPR018289MULE transposase domain
PROSITE profilePS509669.124519555IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5526554IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-4530557IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MASEKKTPPP GSEEDSGQPM SVEAPKVGMS FGSDEEIRCF YMNYASHVGF AIRRACTKIG  60
DDGKLKYFSF SCSRSRKPTY TSKNSFRLRP SMRTDCKAKI NIVVANDGSL VISKLRLDHN  120
HPLTPGIAQH VKCKKDIENH THVRLRPRLM RDLSKNLIKV KPPIDDHHIP TTCTLKLHLG  180
DSQAIQDYFI RMQENNENFF YIMDLKEDGC LRNVFWADSR SREACKTFGD IIMFDTTFLT  240
NNYDVPFVAF FGIDHHGQSI LLGSALLSSQ HTQTYIWLFK SWLRCMSAAA SPQAIFTERD  300
QSIREAVSSV FPEARHRLCL WHIINGIHQQ LEGLNKSQEI NMAIHSVIHD SLTPDDFEQS  360
WVKIIHNHNL VNNEWFESLF ADRQQWAPVF VKEHFWAGIS ITQCCENMNA FFDGFVHSKT  420
SLKWFLEQYN AALRNKIEKE NKADVISSTT TIPLFSDLHL ETQFQETYTH EMFKLFQDEV  480
KGLLYCNTSF LKSDQSISTY EVTDSVKVMD DAPRKEISFH VLYNEDGCHL RCFCLLFEFK  540
GILCKHAISV LVKKNMHKIP SRYILSRWRN DVIRRHTLMK SSSLDDFESN TRMGRYDQLC  600
KHMHQIAELG AESKDKCKFL MDCLNETKEK LVNNNRICLP AGKRKDPISE QITSKKKKKQ  660
ITKFPTLKEK QIQVVDVVIP TEDQATPKAS PSPWIFNGST PTSHQLFLQN HVEPVKLYQE  720
QPRDTGFVEF GNNCAHWPNP GILQHGGGLE SDRTSGNHYI GPTQAASIVQ VGEDPNSNMR  780
GREQDHVDND TATL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1642658KRKDPISEQITSKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PR630.0A0A0K9PR63_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-122FAR1-related sequence 6