PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma179g00370.1
Common NameZOSMA_179G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 582aa    MW: 65066.4 Da    PI: 6.6237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma179g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09110149646
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +E+ ll++a++++G  +W+ +a+++g ++   qc++++ +
  Zosma179g00370.1 110 GDEEILLLEAIEMYGLANWTEVAEHVG-TKIKDQCIEHYTN 149
                       58*************************.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250243.1E-14935578IPR016827Transcriptional adaptor 2
SMARTSM002915.1E-124489IPR000433Zinc finger, ZZ-type
PfamPF005697.2E-104687IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013511.3074891IPR000433Zinc finger, ZZ-type
SuperFamilySSF578504.71E-1648111No hitNo description
CDDcd023353.88E-264896No hitNo description
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.95E-11101155IPR009057Homeodomain-like
PROSITE profilePS5129316.835103155IPR017884SANT domain
SMARTSM007171.1E-6104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-7108150IPR009057Homeodomain-like
CDDcd001672.11E-8108150No hitNo description
PfamPF002494.4E-9111149IPR001005SANT/Myb domain
SuperFamilySSF466891.18E-18487571IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MGRSRVAANP TDDDPSQRSK RRRTVSNGEN LENVATGTST TDGKKALYHC NYCNKDITGK  60
IRIKCTQCPD FDLCIECFSA GVEINPHKNH HPYRVMDNLS FPLITLDWFG DEEILLLEAI  120
EMYGLANWTE VAEHVGTKIK DQCIEHYTNV YMNSPCFPEP DMSHVLGKNR KELLAMAKGQ  180
GDGKQGFPVI GDVTPKEDSP FSSSKVKIED GNRDVLLGRS SPSLNADGES GESKLGVNGC  240
GSSSLPLGAN KKAANVMHIK DGSDRVKHED FHGNRSIGGK KPKYIVDEGP SLTELSGYNP  300
KRQEFDPEYD NDAEQLLADM EFKETDSEIE RNVKLRVLQI YASRLDERKR RKTFILERNL  360
LFPNSFEKDL SPEEKAIYDR FKVFMRFHTL EEHELLMRSL IGEYRLRKRI QELQEAQVAG  420
CCTRTEADAY LARQAAKKLN NNNQVGSTKV FQRGNLANKG EYDGSSPGSV GENQKSKGVG  480
GVESNSRDSS SCITSCLEDW DIVGLPGVSL LSEAEKQFCC ANRLLPCHFL KIQQVLMKEI  540
ITGSVAKKAD AHRLFKVDSI KVDKIYDMVS KKLDLNEEQS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C2e-32481635120Transcriptional adapter 2
6cw3_E2e-32481635120Transcriptional adapter 2
6cw3_G2e-32481635120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780988.10.0transcriptional adapter ADA2-like isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A0K9PTR50.0A0A0K9PTR5_ZOSMR; Transcriptional adapter
STRINGXP_008780988.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]