PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma178g00020.1 | ||||||||
Common Name | ZOSMA_178G00020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | Trihelix | ||||||||
Protein Properties | Length: 353aa MW: 40452.2 Da PI: 9.9787 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.2 | 8.8e-13 | 114 | 198 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ + +L++ +r++l+ W evskk+ ++ r+ qC+++++ l+k+ykk+k+ + + +s +++yf+++e Zosma178g00020.1 114 WTEDSTFVLLDSWGVFYVMNGRKSLRSDEWMEVSKKVnDATRNPRTDAQCRNRIDTLKKKYKKEKAKIAESICLDS-RWVYFKKME 198 **************9999999****************6566679**************************99***9.9*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-17 | 113 | 200 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MNDMSSGASQ QTRIYPKEEN GNKSNAYLSI GNQANGDGDG DEEEKGKYDV RVSGYRRARK 60 EGESSNDSRG RRRKLNNCAS GFQLVPRTEL PLISVSSSVA LTSKTHNRKN PADWTEDSTF 120 VLLDSWGVFY VMNGRKSLRS DEWMEVSKKV NDATRNPRTD AQCRNRIDTL KKKYKKEKAK 180 IAESICLDSR WVYFKKMEQL MGMPKQHAVV PLRRRQRQKP SNLNGTRDNP LGSQLISHGS 240 NGLPSQNLKK SSDDPLSTSF KVLVDSIKKI GMVYENINIS NRNHMLKLKN MRMEFERDLE 300 SQSQRILERA MREHKRLRRE ERYNDEKSED SDEENNDNKG IECSDSVQNE TS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PRP4 | 0.0 | A0A0K9PRP4_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8090 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-30 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma178g00020.1 |