PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma172g00370.1
Common NameZOSMA_172G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 485aa    MW: 55371.1 Da    PI: 4.7705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma172g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09435482347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +W+  E++ l ++vk++G+g+W+ I  +     + Rt  ++k++w++ 
  Zosma172g00370.1 435 NWSLLEEDALREGVKMYGKGNWRMILDHHSdvfELRTVTDLKDKWRNM 482
                       7********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.651428484IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-10430484IPR009057Homeodomain-like
SuperFamilySSF466896.24E-13430483IPR009057Homeodomain-like
SMARTSM007170.0024432484IPR001005SANT/Myb domain
PfamPF002494.9E-7435482IPR001005SANT/Myb domain
CDDcd116602.21E-16436484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGPNSRIWTL EFLLRQRTHD ADTAFFHLIP SITEDCRDIG DNLECFYYDR LKKTILLRSL  60
ERDAVVTDRT LETLELIEQI DRDTAMESPS SLKEAYCAVA EELTVKHLRT ATCDDLLSSS  120
SFDDAVDNIW ECRIARLECS EASSRLFSES LRVRWKEMEQ AVGNFVLQKR LLMSIRTNKE  180
AFGFVLTYIE DAFQKMGPSV LEFMAEEVIS VNNSDTIGSE EVSVAEDDSA SDKSDNFKDA  240
SEIFLSSQSD HSPNCDIKAE VQSVVEKEII VNTEEGLEKH PTPSEEVLHV RKTLKLCSED  300
LHRVVKDPLL SVMAKADDML KDIEIDSQRA TECENTQNRI PIDVPGTSGC ATDSHEELHG  360
QLNQAEKIKV GIMEWNSTAH TIEWNDSIES LSDNDNSSNN SRRLHLPSHK KTRFSPITQQ  420
PISKRSFCRN RKKINWSLLE EDALREGVKM YGKGNWRMIL DHHSDVFELR TVTDLKDKWR  480
NMTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PS660.0A0A0K9PS66_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-13MYB_related family protein