PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma171g00490.1
Common NameZOSMA_171G00490
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 322aa    MW: 35711.3 Da    PI: 7.5677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma171g00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13119170155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  Zosma171g00490.1 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIVGGAINFVKELE 170
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-12117174No hitNo description
PROSITE profilePS5088815.478118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17118189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13119185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-11119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTLETVVFPH EPFMKEWYYS TVVGTGTGGG GGGGGWRHDL LGNGSSMVEC IGRGGEIRNW  60
ETSCSSMVHN LEELDVNNYS SPENNCTTKV VVSEQGANVG KRKRRRTKTC KNKEEVENQR  120
MTHIAVERNR RKQMNEYLAV LRSLMPPSYV QRGDQASIVG GAINFVKELE QLLQSLEGQK  180
QMKQRSASST DLFITFPQSQ SQNPISSSSS SHTAPISTVS VNEVVAENHS SIADIEVTLV  240
ESHANLKVFS RRKPRQLLKM VVGLQNLGLT TLHLNLTTID QMVLYSFSVK VEDDCRLNSA  300
DEIATAVYRM MGKIQEESTY N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105KRKRRR
2101105RKRRR
3101106RKRRRT
4119130RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272971.11e-121PREDICTED: transcription factor bHLH96
TrEMBLA0A0K9PSN50.0A0A0K9PSN5_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRINGXP_010272971.11e-120(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-52bHLH family protein