PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma170g00280.1
Common NameZOSMA_170G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 799aa    MW: 92239.4 Da    PI: 6.6557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma170g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.21e-2671160290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY +YA++ GFsvr+sks++s+++++i++r+fvCskeg++ ++++  + k++r+ra+ r gC+a+++v +++ g+w+ tk+++eHnH +a
  Zosma170g00280.1  71 FYMAYASRYGFSVRISKSRRSRNDESIIMRRFVCSKEGFHMKKDNFdDGKKKRKRATIREGCNAMIEVIQKYYGRWVATKFVKEHNHVVA 160
                       9**************************************99988765789999**********************************876 PP
2FAR179.18.3e-25193283290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY +YA++vGF+vr++ s++s+r++++++r+fvC+keg++++ +++  ++k++rtra  r gCka+++v k++ ++w v+kl+ eH+H+la
  Zosma170g00280.1 193 FYYAYASRVGFEVRIRLSRRSTRDESFVMRRFVCTKEGHSSPYEENydDNKRKRTRAPAREGCKAMFEVIKKEFDRWIVSKLVAEHTHTLA 283
                       9***************************************99988877899999**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2571160IPR004330FAR1 DNA binding domain
PfamPF031011.9E-22193283IPR004330FAR1 DNA binding domain
PfamPF105516.1E-20407497IPR018289MULE transposase domain
PROSITE profilePS5096610.62683721IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-9691720IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6696723IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MEGSSNEDDG LMQDNADLNG NNINTHQIAL DGGMHIVEAE NSNPISHEHD MEMAEPFVGM  60
EFESEEAAKL FYMAYASRYG FSVRISKSRR SRNDESIIMR RFVCSKEGFH MKKDNFDDGK  120
KKRKRATIRE GCNAMIEVIQ KYYGRWVATK FVKEHNHVVA PPSRVRFVAP EEFAHIEPFL  180
GMEFHSHEDA QTFYYAYASR VGFEVRIRLS RRSTRDESFV MRRFVCTKEG HSSPYEENYD  240
DNKRKRTRAP AREGCKAMFE VIKKEFDRWI VSKLVAEHTH TLAIAPSKVH YIQSESEVVV  300
LAKSGGGVRE KSAVGTSNTV LQCGDSVREC PNDDSSSSDQ VPKDENRESF FKIEEDTQNL  360
LEYFKRMQAE NHTFFYAFQV DKNNSLTNIF WADAKSKMAY YYFGDAVTFD TSYKDNQNMI  420
PFVTFTGVNH HLQSVIFGCA LLTDESESSY IWLFEKWIAA MGRAPLSLTI DQNETLMRAV  480
TKVFPDVHRQ VNRWSILSKC REKLSNIYDG AFEAEFENCV NDSETIEAFE WCWNSLMDRY  540
KLRENTWLHS IYDMRQQWVS VYLKHAFCTE VSSSHRPDSM NKFFEKYFNK KTSLLVFVSL  600
FEQAMSSWAE TEALEDFANM YTKPNLKMPS VMLKQAAELY TRSVFEVFQD EFVESLGYFC  660
EKINDGEIVK YNVARDGGKL PNISCRVSYN SIEKKAKCSC CKFEVNGILC RHILRVFLMV  720
GVRSVPDDCM LKRWTKNAKS GYVLDECIQY NDLCRDAIKY AKEGASSMEI YKVAKESLQI  780
AYGEVIAAKK DIGNRCTI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092267.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0K9PUS40.0A0A0K9PUS4_ZOSMR; FAR1-related sequence 5
STRINGOB03G39100.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-153FAR1-related sequence 5