PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma16g01620.1

Common Name

ZOSMA_16G01620

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 266aa MW: 30020.2 Da PI: 9.733

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma16g01620.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.7	3.1e-06	148	188	10	55
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+RR+ri ++ +eL +l+P K+s ae+ + A +Y+k Lq Zosma16g01620.1 148 RQRRKRISNKTQELGKLVPGgH------KMSTAEMFQAAGKYVKFLQ 188 9****************955......***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.233	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-11	141	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-9	143	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.09E-7	146	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMEEMSHHRK LHLHHRRLHH QQKPEEFGLR PTVNIGDSLF HDITINSVGN CELRELESVL 60 LPALLPNEHL IMSRSISPQP MVRSDPLDAA MSYRQQPTVL KRSRGDLIRN DPHVLGYRRP 120 SDNAFSVVSV GENEHEQTQL SPQSFAARQR RKRISNKTQE LGKLVPGGHK MSTAEMFQAA 180 GKYVKFLQAQ VGILSMISPP VEGSGRGGEK QLQQQLLSTT AIQEKLYQIE RCIVPNRTVE 240 GLANDPFVKS HPFISRDLER FTADS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SA82	2e-24	BH052_ARATH; Transcription factor bHLH52
TrEMBL	A0A0K9PVE7	0.0	A0A0K9PVE7_ZOSMR; Uncharacterized protein
STRING	XP_008806162.1	3e-39	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma16g01620.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]