PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g00320.1
Common NameZOSMA_16G00320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31681.1 Da    PI: 8.2534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.8e-161151343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i+n+  r  tf kRr+g++KK +ELS+LCd++++ ++fs+ 
  Zosma16g00320.1 11 IQNDAARRATFKKRRKGLIKKVSELSTLCDVKACALVFSPY 51
                     89*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.236149IPR002100Transcription factor, MADS-box
CDDcd002667.72E-31286No hitNo description
PRINTSPR004044.1E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-24395IPR002100Transcription factor, MADS-box
PfamPF003195.5E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MARKKVKLVW IQNDAARRAT FKKRRKGLIK KVSELSTLCD VKACALVFSP YDTAPEIWPQ  60
DNQDVMRVLG RFRSMPEMEQ SKKMLNQEGF LRNRIGKLHE QLHKLNSENR ETELKLLMSQ  120
CMAGGRHISD LNIDDTRDLG EKLDTELKAV QQKIESLLCT NTRSTTSAPV PMAPDPIMHH  180
RYNVSGHTGH MDHGGMLKNE FQNFDSAMEM FRRHDGNNNN IHNNNNMFMC SPPQQLILPS  240
IDEVPNLHSY IDGGTHLPTL YPGDNNTSWL DNFFHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIQNDAARRATFKKRR
22125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382260.27e-58agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-46AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0K9PSM00.0A0A0K9PSM0_ZOSMR; Uncharacterized protein
STRINGPOPTR_0005s00420.19e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-44AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]