 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zosma169g00450.1 | ||||||||
| Common Name | ZOSMA_169G00450 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 197aa MW: 22463.6 Da PI: 4.8896 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 37.3 | 5.1e-12 | 31 | 77 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ +ErrRR++++++ + Lr+l+P +K+sK ++L+ A++YI++Lq
Zosma169g00450.1 31 KNINAERRRRAKLKDSHHALRSLVPII-----TKMSKEATLTDATDYIRKLQ 77
55678*********************7.....7******************9 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 4.32E-16 | 18 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.86E-11 | 26 | 77 | No hit | No description |
| PROSITE profile | PS50888 | 14.786 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.7E-14 | 29 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.2E-9 | 31 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 4.6E-12 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 197 aa Download sequence Send to blast |
MEFPEHMFNG SGADAVGGGG NSNMVKEYKS KNINAERRRR AKLKDSHHAL RSLVPIITKM 60 SKEATLTDAT DYIRKLQEEI RRLEEELRET LPEDENEENR EEEEDEDKKM DVKGEVDVIP 120 ISRNGFYVKM VCMMSKCRGF SKVVETLGSI GGEMTNVSFN AMDGVCQIMF CLEVEENKRN 180 LKVEKDDVKF LLEKMV* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0K9PT80 | 1e-140 | A0A0K9PT80_ZOSMR; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP11982 | 30 | 36 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16910.1 | 4e-10 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Zosma169g00450.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|