PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 297aa MW: 32671.9 Da PI: 8.6189

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma169g00180.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.8	6.7e-17	99	153	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le++F+++ +++ ++++eL+++l+L rqV vWFqNrRa+ k Zosma169g00180.1 99 RKKLRLSKDQSSLLEDHFRRHTTLNLNQKTELSRRLNLLPRQVEVWFQNRRARTK 153 678899***********************************************98 PP
2	HD-ZIP_I/II	111.2	6.8e-36	99	190	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q++lLE++F+++++L+ ++K+el+r+L+l prqv+vWFqnrRARtk+kq+E+d+ +L++++++l++en+rL+ e eLr++++ Zosma169g00180.1 99 RKKLRLSKDQSSLLEDHFRRHTTLNLNQKTELSRRLNLLPRQVEVWFQNRRARTKLKQTEVDCGFLRNHCERLNDENRRLKMELMELRSKMN 190 69**************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-15	79	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	95	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-16	95	165	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-13	97	159	IPR001356	Homeobox domain
Pfam	PF00046	5.5E-14	99	153	IPR001356	Homeobox domain
CDD	cd00086	5.19E-14	99	156	No hit	No description
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
SMART	SM00340	1.2E-11	155	197	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.1E-9	155	189	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDEETCAMSG LSLQLGLGGK AAAGCGGEDK IINNPSPIRF HMLFPPTHQQ QEKQDLEEEL 60 GSFKGGGGAT SSSGSRRCTR KGHEEDEEVG RDRYSSSVRK KLRLSKDQSS LLEDHFRRHT 120 TLNLNQKTEL SRRLNLLPRQ VEVWFQNRRA RTKLKQTEVD CGFLRNHCER LNDENRRLKM 180 ELMELRSKMN SSGVGAMTSP SQLSPYLAQT AAYIQVCCPS CQKLPVLAST LPPCDQIKTV 240 DLIATKAKSG SCESETSSDI GSSPGAKTTT TSNKDYSRSY SPSIGIGMDM GMALCR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: In leaves by drought stress. {ECO:0000269\|PubMed:17999151}.
UniProt	INDUCTION: In leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	A2XE76	7e-43	HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
Swissprot	Q8GRL4	7e-43	HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBL	A0A0K9PVF8	0.0	A0A0K9PVF8_ZOSMR; Uncharacterized protein
STRING	ORGLA03G0089600.1	4e-42	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-35	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Zosma169g00180.1