PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma165g00400.1
Common NameZOSMA_165G00400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 643aa    MW: 69796 Da    PI: 7.3775
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma165g00400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.92.7e-18253341186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +L++a++++  +l+rg+l++ +Weev+  +     +++  +s +qCk+k +nl+kryk+++++ +++ s s s++p+f++le
  Zosma165g00400.1 253 EWSDTAIGCLLDAYTDKYIQLNRGNLRGRDWEEVATTVsercDKHKSCKSVEQCKNKVDNLKKRYKAERQRLNSG-SLSASHWPWFNKLE 341
                       5********************************988877666999999**************************9.88889*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-21251343No hitNo description
Gene3DG3DSA:3.40.1160.101.2E-64385635IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.47400636IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.15E-48401635IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.08E-110403636No hitNo description
PfamPF006964.9E-19403615IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MSSCGDEDFA ILADGSPPPP FPPPQSQHPT PLHHHQTSVP FITHRYVSQS SSSSNPNTTT  60
LSSLSLHLKK NLVAGLGQQL QEEDGYAAAF SHHHISGRAE EQEHEQEKES KIVLSPPHLP  120
TTSNASFHHN DVACCLADAT ATSTFGHSSP PPQPHMEEIE DHVATEAARN RNHHNYNCQT  180
VMGIPVDNSN VNKRDRDDLS DDGASPLCFS TAASIGGVVG NKRTRHSSTS LTTSATGNAA  240
APSSGDYRKD REEWSDTAIG CLLDAYTDKY IQLNRGNLRG RDWEEVATTV SERCDKHKSC  300
KSVEQCKNKV DNLKKRYKAE RQRLNSGSLS ASHWPWFNKL EQIVGSSAST SITKPISDDD  360
RFTSSAPAAL ASAGGGSFSK QAKRHMTSTA NAIKVKSSTS KWKRVVLKLS GMAFAGNGAQ  420
NVEPEVTMML AREISMAIRL GVQVAIVVGG RNFFCGDAWV ASTGIDRTTA YQIGMMATVM  480
NSILLQASLE KVGVQARVQT SFTMQEVAEP YIRRRAIRHL EKGRVVIFAG VGAGSAHSFI  540
STDTAFTLRA SEINADAVLK GICIKNVYNC HSRGNSIIPF EHISYRESFS RSFSDMDATA  600
ITFCEENNIP VVVFNILEPG NISRALCGEQ VGTLIDRYDA VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-6039763545279Uridylate kinase
3nwy_B1e-6039763545279Uridylate kinase
3nwy_C1e-6039763545279Uridylate kinase
3nwy_D1e-6039763545279Uridylate kinase
3nwy_E1e-6039763545279Uridylate kinase
3nwy_F1e-6039763545279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020687242.10.0uncharacterized protein LOC110103038 isoform X1
TrEMBLA0A0K9PVY50.0A0A0K9PVY5_ZOSMR; UMP kinase
STRINGGSMUA_Achr6P13420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-167Trihelix family protein