 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zosma162g00080.1 |
| Common Name | ZOSMA_162G00080 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
| Family |
LBD |
| Protein Properties |
Length: 216aa MW: 23623.5 Da PI: 7.7202 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma162g00080.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 95 | 8.4e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
+C++C+vlr++C+ +C ++p++ +q++++++++k++G+sn +++++a+p+++r+++++sl+yeA r+ +P+yG+vg++++++++++
Zosma162g00080.1 4 SCNGCRVLRKACNVNCSIRPCLqwiqdSRSQANATQFLAKFYGRSNFINFIDATPHDQRPAIFRSLLYEASGRIVNPIYGSVGLLSSGNWRIC 96
6*********************9988777889************************************************************* PP
DUF260 89 qlkaelallke 99
q++++++l +e
Zosma162g00080.1 97 QMAVDAVLKGE 107
***99988765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MKKSCNGCRV LRKACNVNCS IRPCLQWIQD SRSQANATQF LAKFYGRSNF INFIDATPHD 60
QRPAIFRSLL YEASGRIVNP IYGSVGLLSS GNWRICQMAV DAVLKGEDIT NSNFDAQISM 120
PPPPTTTTTP GYSCAYDIRH VHTNKSIGSM NQKQNEFHGF ADNEKIELDL TLGLDPIAHA 180
GSCTGNSFSA GTTSSSENYR NFPPLAETSD GWTTI*
|
