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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zosma160g00270.1 |
| Common Name | ZOSMA_160G00270 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
| Family |
Trihelix |
| Protein Properties |
Length: 365aa MW: 39507.5 Da PI: 9.9509 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma160g00270.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 39 | 2.2e-12 | 47 | 144 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk.......rtsessstcpy 81
+W++ + +Li+a ++ ++ rg+l++++W+ev++++ + +r+ +qCk++++ ++k++k +k++ ++ ++ +s++p+
Zosma160g00270.1 47 CWSEGATSVLIDAWGDRYLEVTRGNLRQKDWQEVADAVnsrktVVKRPHRTDVQCKNRIDTIKKKFKSEKARIEGdggggggGSGMGESQWPF 139
7*************************************664443334489*******************987543111111134455667777 PP
trihelix 82 fdqle 86
+++le
Zosma160g00270.1 140 YTRLE 144
77775 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MVRSRAPVPG STGPPGPESA GGGGGGGGGG GGKPPPPNPA MPYRDDCWSE GATSVLIDAW 60
GDRYLEVTRG NLRQKDWQEV ADAVNSRKTV VKRPHRTDVQ CKNRIDTIKK KFKSEKARIE 120
GDGGGGGGGS GMGESQWPFY TRLETLIGST ATGLTSNTAS TSARKKKKKK VKNSPNSPLH 180
LLPAPSPPAL PPPPPTRKRS VATLLADSSL KWGNYSAAAA AAAAARDDEP DPDSESSKSS 240
GFAVHPKRRV KKNVETRAPV KTMGFGHRDD EHEEEEEGVK ELANAITRFG EIYERVEIAK 300
QKQLIELEKQ RMEFNKELEF QKMQMFIDSQ VQISRIKRDS ENGGEHSEIS GLEMLNLQLI 360
KMIS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G14180.1 | 1e-34 | sequence-specific DNA binding transcription factors |
