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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma15g01220.1 | ||||||||
Common Name | ZOSMA_15G01220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 193aa MW: 22047.3 Da PI: 6.2743 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.8 | 9.3e-14 | 74 | 121 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn+rEr RR riN+++ +++l+P + K +Ka++L ++eY+k+Lq Zosma15g01220.1 74 QVHNQRERERRGRINQKMKAIQDLIPGC-----HKKDKASMLDDVTEYVKYLQ 121 57*************************9.....699****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.262 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-16 | 74 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-11 | 74 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-16 | 75 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-12 | 76 | 125 | No hit | No description |
SMART | SM00353 | 2.4E-12 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDCTGDVRGS NMAGLFIGED KMVSWLNYDP AAESSRRLDF INTQPPVLIA EEKARCDDGY 60 DNRRTTESRL KAAQVHNQRE RERRGRINQK MKAIQDLIPG CHKKDKASML DDVTEYVKYL 120 QFLIKMMTMV EGWPMPLMMY NNEQLLVPAI EKAFSNKVDI MAGATAFMQQ IAPDKMLDGQ 180 QNWQSDYSGH FI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022561126.1 | 2e-21 | LOW QUALITY PROTEIN: transcription factor PIF1 | ||||
TrEMBL | A0A0K9PUS0 | 1e-143 | A0A0K9PUS0_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 1e-21 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma15g01220.1 |