PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma15g00230.1
Common NameZOSMA_15G00230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 301aa    MW: 33138.3 Da    PI: 5.8204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma15g00230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33138195259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s +prsYYrCt+++Cpvkk+vers +dp++v++tYeg+H+h+
  Zosma15g00230.1 138 EDGYRWRKYGQKAVKNSSYPRSYYRCTTPKCPVKKRVERSYQDPSTVITTYEGKHTHP 195
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-34122197IPR003657WRKY domain
SuperFamilySSF1182903.66E-29130197IPR003657WRKY domain
PROSITE profilePS5081130.917132197IPR003657WRKY domain
SMARTSM007742.7E-38137196IPR003657WRKY domain
PfamPF031065.2E-26138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNTGDFYDLD DSFKQEEEQG DPFCSSIFDD YDLEGLVPPN EMFMDAGAAT TTASADFASS  60
FASEFGGGSG TPATPNSPAT SSSNDVAAEY GQEGNIGKDC GDGSDQSKKT CKATKRGGKR  120
QRQERFAFAT KSDVDHLEDG YRWRKYGQKA VKNSSYPRSY YRCTTPKCPV KKRVERSYQD  180
PSTVITTYEG KHTHPSPINL RSAGNSNLIF KPPEPATTTT TTRFPQDGQF LIHQDIKPML  240
IHSNVDDAKA DMSSGTFDLF FDNISSSSPS PLHHLRDQFP PNHGLLQDVV HSLFRNNQQP  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-271301971077Probable WRKY transcription factor 4
2lex_A6e-271301971077Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798309.12e-57WRKY transcription factor 28-like
TrEMBLA0A0K9PWW40.0A0A0K9PWW4_ZOSMR; WRKY transcription factor 29
STRINGXP_008798309.18e-57(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.18e-46WRKY DNA-binding protein 71