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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zosma15g00060.1 |
Common Name | ZOSMA_15G00060 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family |
B3 |
Protein Properties |
Length: 367aa MW: 40882.4 Da PI: 8.1258 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zosma15g00060.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 97.9 | 6.5e-31 | 83 | 183 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88
f+kv tpsdv+k++rlv+pk++ae++ ++k+e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+
Zosma15g00060.1 83 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSKNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaV 176
89***************************977778999************************************************95435555 PP
EE..EEE CS
B3 89 efelvvk 95
+ +l++
Zosma15g00060.1 177 RDRLFID 183
5555555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MAFAYYSEGK DDEDNSSRRR LSSFTHTSHT PALSHLLPPS SSSTCSSSPT AISRNVSQAD 60 ANDDQPGSSS GADPQPIPKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSKNEKGL 120 LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFGR GVGEAVRDRL 180 FIDWKRKPEI PNRPDFSHLP MQNPYIPMMS FAHSVMPWNH SHTQPIPPYN VYMRSPQPYS 240 HYSHPQHSRL GVQMQYSDND TNAADNGGGD TYAARRSAVL DFDSVPVGHS SLSSTNSKHV 300 RLFGVNLDCS PSSSYIDPCA PLTTSQVRPL LSPPLSLQLG LSNSTADVVD QSPRKDKQPM 360 SLDFDI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 4e-63 | 79 | 190 | 4 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-63 | 79 | 190 | 4 | 116 | B3 domain-containing transcription factor NGA1 |
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