PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma157g00020.1
Common NameZOSMA_157G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 590aa    MW: 65755.3 Da    PI: 5.0366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma157g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.91.7e-1132195892374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + LlecA++v++ d  la + L r++e as +gdp++R+a+yf+eAL +r+++  ++l+++   s ts   ++e +  +k+f+e++P+ kf+
  Zosma157g00020.1 219 LRSLLECARVVDN-DPDLAAKSLIRIRESASDYGDPTERVAFYFAEALYSRVSE-HHQLCSTSYNSLTSALPEEELTLCYKAFNEACPYSKFA 309
                       5789*****7765.99999**********************************9.67777777666666677999999*************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       hltaNqaIle++++++++HiiDf+i qG+QW+aLlqaLa+R++g+p ++Ri g++++  g   + +l +tg+rL++fAe l+++fef++ v++
  Zosma157g00020.1 310 HLTANQAILESTSSASKIHIIDFGIVQGVQWAALLQALATRSSGKPeKIRISGIAAACLGnnPSAALMTTGSRLRQFAELLDLEFEFEA-VMT 401
                       ******************************************77776*********877788999************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        le+l+++++r++++E +a+n++lql+++l e+ ++ s    vL+++ksl+Pkvv++ e ea +n+  Fl+rf++al++ys++++s+e  + r
  Zosma157g00020.1 402 PLEKLSPSSFRIESDEFVAINFMLQLYNILGENKEVVS---GVLHMMKSLEPKVVTLGEYEARLNGVGFLDRFSNALSFYSSIMESIEPAMER 491
                       ******************************99998888...**************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLv 368
                       es+er+ vEr+l+gr+i+ +v  +g+  +er+e++++Wr  +e++GFkp++ls++a++qak ll +++ s  y++ e+s +++ + W++rpL+
  Zosma157g00020.1 492 ESSERVRVERVLVGRRIKRAVGISGDG-KERMEEMNEWRVLMESCGFKPMKLSHYAVSQAKILLWNYNySTKYSLVESSPAFLsIAWNERPLL 583
                       **************************9.****************************************9999*******99999********* PP

              GRAS 369 svSaWr 374
                       +vS+Wr
  Zosma157g00020.1 584 TVSSWR 589
                       *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.071192567IPR005202Transcription factor GRAS
PfamPF035146.0E-111219589IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QKQQQQKHRQ QQQMMAAAVS PFRMPSPWED QQVFPSLVDD  60
PFHPDDSASA ATASASILHF AASVPDHSGF PISNFQDATA SSTGVEDFES DEWMESLGNP  120
WQESSGVGSD FPSVFLNDDF GSDLNRVFVN ENPSNVKVTH NQQQLIPLQI QSWTTTPSVR  180
PQSHSPLFSR EQERPIIPDS VAVVRRQKPP PVQCTTPLLR SLLECARVVD NDPDLAAKSL  240
IRIRESASDY GDPTERVAFY FAEALYSRVS EHHQLCSTSY NSLTSALPEE ELTLCYKAFN  300
EACPYSKFAH LTANQAILES TSSASKIHII DFGIVQGVQW AALLQALATR SSGKPEKIRI  360
SGIAAACLGN NPSAALMTTG SRLRQFAELL DLEFEFEAVM TPLEKLSPSS FRIESDEFVA  420
INFMLQLYNI LGENKEVVSG VLHMMKSLEP KVVTLGEYEA RLNGVGFLDR FSNALSFYSS  480
IMESIEPAME RESSERVRVE RVLVGRRIKR AVGISGDGKE RMEEMNEWRV LMESCGFKPM  540
KLSHYAVSQA KILLWNYNYS TKYSLVESSP AFLSIAWNER PLLTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1532155891375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790358.10.0LOW QUALITY PROTEIN: SCARECROW-LIKE protein 7
SwissprotA0A024B7I01e-174SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0K9PV920.0A0A0K9PV92_ZOSMR; GRAS family transcription factor
STRINGXP_008790358.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-138GRAS family protein