PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma156g00330.1
Common NameZOSMA_156G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 478aa    MW: 51651.1 Da    PI: 8.1774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma156g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-114772126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ++++ C++f +tGtC yGdrC+F+H+
  Zosma156g00330.1 47 PGEPDCSYFIKTGTCGYGDRCRFNHP 72
                      5789*********************8 PP
2zf-CCCH40.74e-1394118327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++lC++f+rtGtCk+G++Ck++H++
  Zosma156g00330.1  94 QPLCQYFMRTGTCKFGSTCKYHHPK 118
                       79*********************96 PP
3zf-CCCH33.19.7e-11143168227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++ +C+++ ++G+Ck+G +CkF+H++
  Zosma156g00330.1 143 GEQECSYYIKSGQCKFGVTCKFNHPQ 168
                       6789********************97 PP
4zf-CCCH34.43.7e-11301327127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+f++rtG Ck+G +C+++H+p
  Zosma156g00330.1 301 PGQPECQFYMRTGDCKFGQTCRYHHPP 327
                       5789*********************97 PP
5zf-CCCH33.57.2e-11350373427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       + C f+a+ G+Ck+G++CkF+H++
  Zosma156g00330.1 350 PSCIFYAQHGICKFGPTCKFNHPM 373
                       67********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6524674IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-64673IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-84872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-65173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-55272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.87391119IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-791118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-694118IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-1094118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-596117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723141169IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018141168IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751300328IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5304327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817346374IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5346373IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8350373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6350376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4352378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEQQHQYQYQ QKQMYSRNLD PQTGLEESMW QLRLAGSGVG PDYPERPGEP DCSYFIKTGT  60
CGYGDRCRFN HPHSLAAVTG VTRSVGEFPE RIGQPLCQYF MRTGTCKFGS TCKYHHPKQG  120
GLVTLNVHGY PLRPIHPCWQ TQGEQECSYY IKSGQCKFGV TCKFNHPQPA GASVPQPAPT  180
FYPTAQSSPI HSPHPYSTIV NWPVATRPQL LPGPSYMQTN YGHMIMSPGF VPVSGWNPYP  240
GPVSSVVSPG GQTVQAGSIY GSLPQQLSAS APAYHSPYPL VSTLAGPSSS SQKEQNFPEN  300
PGQPECQFYM RTGDCKFGQT CRYHHPPEWS IPKTTCALSP IGLPLRPGAP SCIFYAQHGI  360
CKFGPTCKFN HPMEVLRNVS SETHIAPPHT LGMAMPILPP SPSSSALRPE FFVSSSNQEA  420
FSSIIPLNGT SSASVGSIFS TAKSPSQSSP TVSAQNSDSL SSISNTMGQG GVLSCSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921758.11e-173zinc finger CCCH domain-containing protein 6
SwissprotQ84W911e-131C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9PVF30.0A0A0K9PVF3_ZOSMR; Zinc finger CCCH domain-containing protein 32
STRINGXP_008796231.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-128C3H family protein