PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma154g00170.1
Common NameZOSMA_154G00170
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 260aa    MW: 28618.6 Da    PI: 9.5172
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma154g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222e-3844103362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++ l+cprC+stntkfCyynnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+++k++
  Zosma154g00170.1  44 QAPLNCPRCESTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRRNKRT 103
                       67899***********************************************99876654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-253298IPR003851Zinc finger, Dof-type
PfamPF027013.3E-3246101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.25547101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVYTSMNPPD HWNHQQQQRQ QQHQQHQQQH GDRGVVGKLK RPEQAPLNCP RCESTNTKFC  60
YYNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRRN KRTSSKTISK LSTTGRGGAV  120
TNNNNSRNIN NIDVAHLTDY GGLGFQSIDL VNHNNYQIGG GGNGGIEYLQ FPQFPLFTNN  180
TSTTTTTTMA NAIGIDQLYQ FDGTTPVGFT TADGTTAENM QYWSGNINGN IAGSSNNITA  240
GYPSLPSSGW MDLAGFNLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PXX10.0A0A0K9PXX1_ZOSMR; Dof zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.22e-33Dof family protein