PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Zosma153g00330.1

Common Name

ZOSMA_153G00330

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 296aa MW: 34114.3 Da PI: 10.4121

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma153g00330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+Fs+ L H +H Zosma153g00330.1 167 YKCKTCNKRFSSFQALGGHRTSH 189 9***********99998888777 PP
2	zf-C2H2	13	0.0003	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg+ F + L H+r+H Zosma153g00330.1 254 HKCSICGTKFFSGQALGGHMRRH 276 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.54E-10	166	189	No hit	No description
PROSITE profile	PS50157	11.427	167	194	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.5E-11	167	190	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.035	167	189	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	169	189	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.54E-10	249	276	No hit	No description
PROSITE profile	PS50157	9.702	254	281	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.3E-9	254	278	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	254	276	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	256	276	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MNFHCFQFSI LRKHRVTDKF ICVIIVQFMI QLLLNISWSI SVYHNVIHPT NPMHHTQGKK 60 SSNQGHHQRR YKDHQPDSEM DPWKRNIYPS YSNGQHDMMN SILSLTEDEK IAIEGLLLLQ 120 KQPEVKFLEM RGNVQKKMIF SKNETIANNL IIAENREKVK LEDTHKYKCK TCNKRFSSFQ 180 ALGGHRTSHK NPKKTTSILN LYVDENTLNR SKFIDKGGRC NMDINIESPF SAIKPSSMSS 240 SSNYNIAIKK KKIHKCSICG TKFFSGQALG GHMRRHRKDV QTLIKNSPQS TCSSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PY56	0.0	A0A0K9PY56_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Zosma153g00330.1