PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma153g00280.1

Common Name

ZOSMA_153G00280

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 410aa MW: 45198.1 Da PI: 6.9639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma153g00280.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	238	285	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Zosma153g00280.1 238 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 285 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.52E-8	232	289	No hit	No description
SuperFamily	SSF47459	4.06E-15	232	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	234	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.519	234	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-6	238	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	240	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MEQSVAADGG SGNSGDFSHV HHHHHREISE TLRFQEEIQS LIRENLLELD PETDGGANNS 60 SSFTALLGLP PNQAMELLHP PHQLSHHHNH YRHQEIVPTT STLEARRSVV PNEYLQFRCS 120 PTFPSNVALV ERAARYSVFA SEGSSSPETS VVPSNSENNS SPKVKCEPAD DSDLKSPPKQ 180 KRANGKRKPS EKCVKPTKRY GKKSKNGGND VGDKKDGGDD EKPPYVHVRA RRGQATDSHS 240 LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQSLQRQVEF LSMRLAAVNP 300 RIDFGGIESF LPSDNATVTR CNNGGVGLVA SIWPDIQVDG GGVRPQQQQI WQVDLLPSQQ 360 QTSSSSSLWD RDDNHQNQHH GFINHGPSLI GLDYTNPVSV ETNQLKTEM*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MEQSVAADGG SGNSGDFSHV HHHHHREISE TLRFQEEIQS LIRENLLELD PETDGGANNS  60
SSFTALLGLP PNQAMELLHP PHQLSHHHNH YRHQEIVPTT STLEARRSVV PNEYLQFRCS  120
PTFPSNVALV ERAARYSVFA SEGSSSPETS VVPSNSENNS SPKVKCEPAD DSDLKSPPKQ  180
KRANGKRKPS EKCVKPTKRY GKKSKNGGND VGDKKDGGDD EKPPYVHVRA RRGQATDSHS  240
LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQSLQRQVEF LSMRLAAVNP  300
RIDFGGIESF LPSDNATVTR CNNGGVGLVA SIWPDIQVDG GGVRPQQQQI WQVDLLPSQQ  360
QTSSSSSLWD RDDNHQNQHH GFINHGPSLI GLDYTNPVSV ETNQLKTEM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010913937.1	1e-113	transcription factor bHLH48 isoform X2
Swissprot	Q8VZ02	3e-67	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0K9PVY6	0.0	A0A0K9PVY6_ZOSMR; BHLH transcription factor
STRING	XP_008782895.1	1e-105	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	3e-61	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma153g00280.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]