PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma14g00980.1
Common NameZOSMA_14G00980
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 434aa    MW: 48440 Da    PI: 8.6908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma14g00980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-057294123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Zosma14g00980.1 72 FMCEICNKGFQRDQNLQLHKRGH 94
                     89******************988 PP
2zf-C2H212.40.00049149171123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Zosma14g00980.1 149 WKCDKCSKKYAVQSDWKAHSKTC 171
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-77194No hitNo description
Gene3DG3DSA:3.30.160.601.0E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.9E-57294IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.037294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355140114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-7144169No hitNo description
SMARTSM00355150149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKRSINPQGR REEDEEEEEE DLSTVSSDKQ QNSRFEPANI SSKKKRSLPG NPDPEADVVA  60
LSPKSLLATN RFMCEICNKG FQRDQNLQLH KRGHNLPWKL KQRSSNEIRK KKVYICPVLS  120
CVHHDRTRAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTKEYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARVIST NSMEINHLHL HHNHNHNQFM NGFQDILPLK  240
MRQDLPPWLM QTTASSNIPF QNSLFSTRSE HHETSEGYTT NNRSNQSSLP DLPPALLQKT  300
TTTTTTTGHS PSQQTISGLF GHGGLISSSS STQESTGGST GGGNGYVHDM MLPSLPTSST  360
EAAAASGLYV SYEDAAAINI HERKKDHGLT RDLLGLRAFS HNDILNMVGL DPIPNTSTSS  420
SSYHHHPQNP WLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35145209367Zinc finger protein JACKDAW
5b3h_F2e-35145209367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198110KLKQRSSNEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573141.11e-135protein indeterminate-domain 7-like
SwissprotQ8H1F51e-106IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0K9PWL50.0A0A0K9PWL5_ZOSMR; Uncharacterized protein
STRINGXP_008793218.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.16e-96C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]