PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma14g00330.1 | ||||||||
Common Name | ZOSMA_14G00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 30647.8 Da PI: 8.9341 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ G+g+W+ +++ g+ R+ k+c++rw +yl Zosma14g00330.1 14 KGPWTPEEDIILVSYIHENGPGNWRVVPSNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T E +l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Zosma14g00330.1 67 RGQFTDHEVKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.694 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.39E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.84E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.216 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.80E-10 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGRPPCCGKI GVKKGPWTPE EDIILVSYIH ENGPGNWRVV PSNTGLLRCS KSCRLRWTNY 60 LRPGIKRGQF TDHEVKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLH 120 SSQGNDGFTK GQWEKKLQTD INMAKKALCD ALSIDQPNIN ALQTYLSPTH QKQKHQIIPT 180 TSSSSVYASS AENISRLLKN WVHKSPNSAP PKPESHDSIF DFESTTTEAS ESTTLFQEDL 240 KSINFQEQLP LSMLESWLLA ESNSDPVDLL N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-24 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-23 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-23 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495344.2 | 1e-113 | myb-related protein 306 | ||||
Swissprot | P81392 | 1e-106 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A0K9PYH1 | 0.0 | A0A0K9PYH1_ZOSMR; Uncharacterized protein | ||||
STRING | XP_007138187.1 | 1e-109 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 5e-89 | myb domain protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Zosma14g00330.1 |
Publications ? help Back to Top | |||
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