PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 332aa MW: 37666.9 Da PI: 6.6797

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma14g00260.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.7	3.9e-52	13	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+++yLkkk+ +k+e+ evi+evd++++ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk Zosma14g00260.1 13 VPPGFRFHPTDEELLHYYLKKKILFEKFEI-EVIREVDLNRLEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKC 105 69**************************.99**********963433332566******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + +++g++ktLvfy+grap+g+k+dW+mheyrle Zosma14g00260.1 106 IRD-SFRKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 142 9.8899****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-60	7	164	IPR003441	NAC domain
PROSITE profile	PS51005	57.532	13	164	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MASSSSTSAS FGVPPGFRFH PTDEELLHYY LKKKILFEKF EIEVIREVDL NRLEPWDLQE 60 RCRIGSAPQN EWYFFSHKDR KYPTGSRTNR ATNAGFWKAT GRDKCIRDSF RKIGMRKTLV 120 FYRGRAPHGQ KSDWIMHEYR LEDSEDTQPV GTEDGWVVCR VFLKKNFFKI AGASGSDEGG 180 SGGMGQGGGI EEHMGLPLMV ATTDQFRMPT QYIHSEQQEQ EQLQHYNSSI YKPPSDLGLQ 240 YTHLQSHHYP PQIQVQNLLP DHRQPGSGPN YDFSALPGEL DVSGGGHGGD ENDWTMLGRF 300 GNTTAATEVH HMNQMPNSRG EMDLWGYGKQ Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-51	1	166	3	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252331.1	1e-121	PREDICTED: protein BEARSKIN2-like
Refseq	XP_020690248.1	1e-121	protein BEARSKIN2-like
Swissprot	Q9SV87	1e-106	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A0K9PYG6	0.0	A0A0K9PYG6_ZOSMR; Protein BEARSKIN1
STRING	XP_010252331.1	1e-120	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9297	30	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	3e-94	NAC domain containing protein 70

Link Out ? help Back to Top
Phytozome	Zosma14g00260.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]