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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma14g00200.1 | ||||||||
Common Name | ZOSMA_14G00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25567.4 Da PI: 9.9641 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.8e-07 | 48 | 101 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +h +ErrRR+++ + f Lr ++ + s+ + K K +Le Av I++L Zosma14g00200.1 48 THTDVERRRREKLSKLFIALRHVVQTnKSSSQIIKrsTIKTLVLEDAVAVINEL 101 89************************6654444440355666689999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.045 | 44 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-8 | 47 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-5 | 48 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.85E-5 | 48 | 105 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-8 | 48 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-4 | 50 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGLTHVGDML ILLILYIFTL NFHISVDLIP LIMSSPFLLA SLKITPITHT DVERRRREKL 60 SKLFIALRHV VQTNKSSSQI IKRSTIKTLV LEDAVAVINE LKTNITALEF EGEILRSQIK 120 SPERIDKIEK MGVMEHKLLN IEVTKVGKDV MLIRMQSDKM NHPAARLMTV LKELDFEIGF 180 ASLSVIENIT IQHVTILMSD TTDRILYTKD QLVTVLNAKL VRFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 57 | ERRRRE |
2 | 53 | 58 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PWF0 | 1e-158 | A0A0K9PWF0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 9e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma14g00200.1 |