PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 386aa MW: 42783.4 Da PI: 9.608

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma148g00390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.5e-06	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H Zosma148g00390.1 72 FPCEVCGKGFQRDQNLQLHRRGH 94 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.37E-7	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-6	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.635	72	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.6E-4	136	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.37E-7	143	168	No hit	No description
SMART	SM00355	220	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010150	Biological Process	leaf senescence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	Biological Process	photoperiodism, flowering
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MAEDDEGRKI GRGYMESRHI PTIFLQNPCL QKEETKPSPA MKKKKRNLPG TPDPTAEVIA 60 LSPKSLLATN RFPCEVCGKG FQRDQNLQLH RRGHNLPWKL RQRSSASPRK RVYVCPEKIC 120 VHHNPKRALG DLTGIKKHYC RKHGEKKWKC DRCSKRYAVA SDWKAHCKSC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA EESAKLSGTG AGTGSSNISS LTTAISSGHY PVDQRSSESV 240 HLHDLQHLGS VTAMQMFGDL SWMSGTKISS GSLPSLYSTQ INQQAETGPE PDMSATALLQ 300 KAAQIGVTSS TGVDYHATSL VDFNPNNHDI VTGSGIFPTL DQFETMYANF GDNATRREGK 360 TRDFLGVGGR QMHHVRRYPL FPPSN*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MAEDDEGRKI GRGYMESRHI PTIFLQNPCL QKEETKPSPA MKKKKRNLPG TPDPTAEVIA  60
LSPKSLLATN RFPCEVCGKG FQRDQNLQLH RRGHNLPWKL RQRSSASPRK RVYVCPEKIC  120
VHHNPKRALG DLTGIKKHYC RKHGEKKWKC DRCSKRYAVA SDWKAHCKSC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA EESAKLSGTG AGTGSSNISS LTTAISSGHY PVDQRSSESV  240
HLHDLQHLGS VTAMQMFGDL SWMSGTKISS GSLPSLYSTQ INQQAETGPE PDMSATALLQ  300
KAAQIGVTSS TGVDYHATSL VDFNPNNHDI VTGSGIFPTL DQFETMYANF GDNATRREGK  360
TRDFLGVGGR QMHHVRRYPL FPPSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	144	207	3	66	Zinc finger protein JACKDAW
5b3h_F	5e-33	144	207	3	66	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269\|PubMed:21265895, ECO:0000269\|PubMed:25829440, ECO:0000269\|PubMed:25929516}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269\|PubMed:16640459}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020690977.1	1e-124	zinc finger protein MAGPIE-like
Swissprot	Q9FFH3	1e-109	IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBL	A0A0K9PZ45	0.0	A0A0K9PZ45_ZOSMR; Zinc finger family protein
STRING	Gorai.005G198900.1	1e-121	(Gossypium raimondii)
STRING	XP_008783278.1	1e-121	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-112	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Zosma148g00390.1

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Long Y, et al. In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature, 2017. 548(7665): p. 97-102 [PMID:28746306]