PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 1800aa MW: 202703 Da PI: 5.0983

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma148g00360.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.9	3.1e-17	43	97	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle Le+ ++ +yps++ r+eL+ kl+L++rq ++WF+ rR k++k Zosma148g00360.1 43 KRKMKTAYQLELLEKTYATASYPSEAVRAELSVKLDLSDRQLQMWFCHRRLKDRK 97 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-15	19	98	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-17	23	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.807	38	98	IPR001356	Homeobox domain
SMART	SM00389	4.1E-15	40	102	IPR001356	Homeobox domain
CDD	cd00086	4.89E-12	43	97	No hit	No description
Pfam	PF00046	8.8E-15	43	97	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.013	578	637	IPR018501	DDT domain
SMART	SM00571	4.4E-22	578	637	IPR018501	DDT domain
Pfam	PF02791	2.2E-18	579	634	IPR018501	DDT domain
Pfam	PF05066	7.2E-14	760	827	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.8E-5	969	1013	IPR028942	WHIM1 domain
Pfam	PF15613	2.6E-13	1146	1218	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1800 aa Download sequence Send to blast
MEVSDGDESG EKSLPLLPQP PQPAPPPPPK TEGAGGSGEK STKRKMKTAY QLELLEKTYA 60 TASYPSEAVR AELSVKLDLS DRQLQMWFCH RRLKDRKASE MAAATPAGGG SVSCSGSSSH 120 QEPRKALARM YAPSSSRMIA EPPPVPPPPL SQSIVRSRYY DVMPLPHHSV SELNVVAFVE 180 SQLGERIRED GPILGMVFDP LPPGAFGAPL EPTVQQKHPG RSYDAELFEG HDTKSFKTSS 240 FLPSTEHCLI TSSSTGKRKA KMAHSQLVKR PVHEYQFLPE QPSARSDGYG RIPSSHLYDP 300 SIDDTGNRLS PLQSGRLFVH DNDRMPIKQG THHNFPSSSM EYDGYHHKAL YSNSGIDAPF 360 SSQHAIGIEN PFLTPDRRMN REEDGAPIER KRKSEEARIA KEVEAHEKRI RKELEKQDIL 420 RRKREENMRK EMERHGREKK KEEERLLREK QREEERYQRE LKREQERRER FLQKENQRAE 480 KIRLKEEIRR EKEAAKIKAA NERATARRIA REYMDLIEDE RLELMEHAAS SKELPSITSL 540 DSETLQNLNL FQDMLKEFPP KSVSLKQPFA IQPWANSEEN IGNLLMVWRF LITFADVLSL 600 WPFTLDEFVQ ALHDYDPRLL GEILIALLKC IIKDIEDVAR TPATSLGGNH SSAVNPSGGH 660 PQVIEGAYAW GFDIRSWQTH LNPLTWPEIL RQFALSAGFG PQLKKRIVEK SYYRDENEGH 720 DGEDIVSTLR SGMAAENALA VMQEKGFSQS RKSRHRLTPG TVKFAAFHVL SLEGDNSLTI 780 LEVADKIQAS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRPAY RKDPSDAEAI 840 LAAAREKIQI FENGFSESEE AEKDTVFVDE TERDEVSESD GADDLEIDGV NPQRNFAEVP 900 NHYEVKSATT SACLGNGNNI NYDGMDPHGS TGNLDETKDG IISGAQKTHL LDISEEKVKV 960 DDTEIDESNS GEPWVQGLME GEYSDISVEE RLNSLVSLVS VAIEGNTIRV ILEERMEAAN 1020 ALKKQMWAEA QLDKRRMKEE YMSRLEFSSI GMKTEVINPD IDGSHNLFNG VDNKGSVINL 1080 NASVNGEPFD LENPNSMIVE KNMAGQEITA YPDGFQPQQN GNMAEKSRSQ LKAYIGHKAE 1140 QVHVYRSLPL GQDRRRNRYW QFTASASKND PGSGRIFFES RDGFWRVIDS EEVFDCLIAS 1200 LDTRGVRESH LHTMLQKIES SFKEAIRNNC RGDTLSSSRV LKTKSVEMTS SPDFGIVMDS 1260 PQSTVCVLTS DASEQSSTFK VELGRNDVEK NTALKRYQDF QRWVWNESFN PTVTCAMKFG 1320 KKRCLEVLGT CNSCFESHFS EEKHCSLCHR TFKICYNFEN FFSDHVSQCE DNRKIDPSAT 1380 IQCSNSSLPI RFQIIKTLLA NIEASIPSEA LQPFWTDDFR KSWSVKLHIS STAEDLFQML 1440 TLLENTINRD CLSSNYETTN ELLGCSMAVI NDGLVPVLPW IPHTTAAVAL RLMDLDASIF 1500 YALDQKAESL KEKDSGELIK LPTKGYTANE IIDFEANEME IHKEFPPESN NLAESVIRSS 1560 STRGRGRGTR GRGRGGRPRG STSSTRSEFK EERIKSSLRT KRRQPKCKTR GRGRSRGRRT 1620 VRPRQIPSRT NKVDGGLIGK NTHQGGFLNI SNDHRSVARG SLESSEEREE WNGMEIPQAY 1680 AEEEDNTVGY SGSDDNNGLA SGDEYDEQTP VDYSLRVYGN TKHRTILDDE SEEDDIDRET 1740 ADNVDDDGDR DYANEDMEDD LEDDDDIIEV DGDETADFDR NGNDEDDGND ASYSSEYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1800 aa Download sequence Send to blast

MEVSDGDESG EKSLPLLPQP PQPAPPPPPK TEGAGGSGEK STKRKMKTAY QLELLEKTYA  60
TASYPSEAVR AELSVKLDLS DRQLQMWFCH RRLKDRKASE MAAATPAGGG SVSCSGSSSH  120
QEPRKALARM YAPSSSRMIA EPPPVPPPPL SQSIVRSRYY DVMPLPHHSV SELNVVAFVE  180
SQLGERIRED GPILGMVFDP LPPGAFGAPL EPTVQQKHPG RSYDAELFEG HDTKSFKTSS  240
FLPSTEHCLI TSSSTGKRKA KMAHSQLVKR PVHEYQFLPE QPSARSDGYG RIPSSHLYDP  300
SIDDTGNRLS PLQSGRLFVH DNDRMPIKQG THHNFPSSSM EYDGYHHKAL YSNSGIDAPF  360
SSQHAIGIEN PFLTPDRRMN REEDGAPIER KRKSEEARIA KEVEAHEKRI RKELEKQDIL  420
RRKREENMRK EMERHGREKK KEEERLLREK QREEERYQRE LKREQERRER FLQKENQRAE  480
KIRLKEEIRR EKEAAKIKAA NERATARRIA REYMDLIEDE RLELMEHAAS SKELPSITSL  540
DSETLQNLNL FQDMLKEFPP KSVSLKQPFA IQPWANSEEN IGNLLMVWRF LITFADVLSL  600
WPFTLDEFVQ ALHDYDPRLL GEILIALLKC IIKDIEDVAR TPATSLGGNH SSAVNPSGGH  660
PQVIEGAYAW GFDIRSWQTH LNPLTWPEIL RQFALSAGFG PQLKKRIVEK SYYRDENEGH  720
DGEDIVSTLR SGMAAENALA VMQEKGFSQS RKSRHRLTPG TVKFAAFHVL SLEGDNSLTI  780
LEVADKIQAS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRPAY RKDPSDAEAI  840
LAAAREKIQI FENGFSESEE AEKDTVFVDE TERDEVSESD GADDLEIDGV NPQRNFAEVP  900
NHYEVKSATT SACLGNGNNI NYDGMDPHGS TGNLDETKDG IISGAQKTHL LDISEEKVKV  960
DDTEIDESNS GEPWVQGLME GEYSDISVEE RLNSLVSLVS VAIEGNTIRV ILEERMEAAN  1020
ALKKQMWAEA QLDKRRMKEE YMSRLEFSSI GMKTEVINPD IDGSHNLFNG VDNKGSVINL  1080
NASVNGEPFD LENPNSMIVE KNMAGQEITA YPDGFQPQQN GNMAEKSRSQ LKAYIGHKAE  1140
QVHVYRSLPL GQDRRRNRYW QFTASASKND PGSGRIFFES RDGFWRVIDS EEVFDCLIAS  1200
LDTRGVRESH LHTMLQKIES SFKEAIRNNC RGDTLSSSRV LKTKSVEMTS SPDFGIVMDS  1260
PQSTVCVLTS DASEQSSTFK VELGRNDVEK NTALKRYQDF QRWVWNESFN PTVTCAMKFG  1320
KKRCLEVLGT CNSCFESHFS EEKHCSLCHR TFKICYNFEN FFSDHVSQCE DNRKIDPSAT  1380
IQCSNSSLPI RFQIIKTLLA NIEASIPSEA LQPFWTDDFR KSWSVKLHIS STAEDLFQML  1440
TLLENTINRD CLSSNYETTN ELLGCSMAVI NDGLVPVLPW IPHTTAAVAL RLMDLDASIF  1500
YALDQKAESL KEKDSGELIK LPTKGYTANE IIDFEANEME IHKEFPPESN NLAESVIRSS  1560
STRGRGRGTR GRGRGGRPRG STSSTRSEFK EERIKSSLRT KRRQPKCKTR GRGRSRGRRT  1620
VRPRQIPSRT NKVDGGLIGK NTHQGGFLNI SNDHRSVARG SLESSEEREE WNGMEIPQAY  1680
AEEEDNTVGY SGSDDNNGLA SGDEYDEQTP VDYSLRVYGN TKHRTILDDE SEEDDIDRET  1740
ADNVDDDGDR DYANEDMEDD LEDDDDIIEV DGDETADFDR NGNDEDDGND ASYSSEYSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008811887.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0K9PZ17	0.0	A0A0K9PZ17_ZOSMR; Putative Homeobox protein
STRING	XP_008811887.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Zosma148g00360.1