PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma147g00350.1
Common NameZOSMA_147G00350
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 100aa    MW: 11275 Da    PI: 10.5086
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma147g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.43.4e-113474143
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43
                      ++Y +YA ++GFsvrk + ++sk  +   k+t+vCskegk++ 
  Zosma147g00350.1 34 EMYYSYAGQMGFSVRKGSIRHSK--EGLRKKTYVCSKEGKSRA 74
                      58*******************93..347***********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-83475IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MNKQNDIEQR KALLGVVEEP KVGMKFDSIK DAEEMYYSYA GQMGFSVRKG SIRHSKEGLR  60
KKTYVCSKEG KSRAVVPVVD ILSEQPKKPR STHTKSKNR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PWT22e-66A0A0K9PWT2_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-09FAR1-related sequence 12