PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma147g00340.1
Common NameZOSMA_147G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 525aa    MW: 59474.6 Da    PI: 4.9091
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma147g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-161053245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      +i+ +   qv+fskRr g +KKA+EL +LC+a va+i+fs++g+
  Zosma147g00340.1 10 KIKKEAALQVSFSKRRFGAFKKANELVTLCGALVALIVFSPSGR 53
                      67778888**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.72E-20172IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.175161IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-12323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-191056IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGRQKIPMEK IKKEAALQVS FSKRRFGAFK KANELVTLCG ALVALIVFSP SGRPYSIGFP  60
SVDIVLDLFL HHGLPSDFLL QGCSFLSRQL NDELMNVTSM YEQKYGQKIS IANDLKRAAD  120
NINLHHSTTG RTYDGNSLPR LEQLLQQMIE VRQRLINRKS ELDSEKASSS SSSSSTSTFP  180
DVSAAAAVTA QKLRRNQPAP IPSIHPYLGL DQLRLNEFFN PPSTTQMPPS MFPIQQHNPR  240
NYQPPNLNNQ QPQPIQQHNP RNYQAPNLNN QQQQRIQQLN PRNYQPPNVS NQQQQPIQQH  300
NNLNYQQPIV NNQQQQHNNF NYQQPIVNNQ QQQHNNFNHQ QPIVNSEQQR IQQANENYQQ  360
QDYQIPGGEF ANMNSFEFTV NTNLFCESSH GAGPSNISNN EDINNSGSAL AANSADHLIM  420
TSAPLPITLG TNDAAQNYVE EILLNDDENL MMTEPIDAEA LRRYEESLMG RSEKSSPIDL  480
DVINSEYDEG VQVESELFQT ANDACDQYHN DPFDYQYLEA DDDY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZ560.0A0A0K9PZ56_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61