PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma145g00090.1

Common Name

ZOSMA_145G00090

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 396aa MW: 44457.9 Da PI: 7.4705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma145g00090.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.7	5.3e-15	122	214	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+++GFsvr +++ + ++ +++++ Csk+g+++ t+ + r++ ++r+gC a++k k+ + ++kw ++++l+HnH+++ Zosma145g00090.1 122 YYDFASSTGFSVRLGLTHNIldkeTGQKILVMKRLLCSKQGSPNLILPPTNGTGRKNGVSRCGCLASIKFKRIDrSDKWITDSVNLDHNHQFT 214 999********9877665553344556789********999999999****************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-11	122	214	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-13	336	392	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MNYQFNSLHC QTTVNPINSS VNVSRSLNTD NVQCNFFDSE NVQSASADIG ESSVQIPANS 60 DNVSYGTAKT PDNHLKRKFS STGGYPTSPN LENGSSGYSQ SSKPCPIAGE VFPSYEMAVQ 120 SYYDFASSTG FSVRLGLTHN ILDKETGQKI LVMKRLLCSK QGSPNLILPP TNGTGRKNGV 180 SRCGCLASIK FKRIDRSDKW ITDSVNLDHN HQFTTSSKIR YLPINRSISH TFKILFSSLA 240 DVNVPVSQQA AYFSNQLGGP ENMGCMTLDM NNMVRDDRID LKNYDVDLIV EDFKMKKLEN 300 AQFFYDLVKD DEGRLKHLFW DDPTMIENYK LFGDSVTFDR TYKTNVYSMV FGMFCGVNHQ 360 RKTTIFGSAF LSNENVDFFT WLFNTFKQCM GHPPQ*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MNYQFNSLHC QTTVNPINSS VNVSRSLNTD NVQCNFFDSE NVQSASADIG ESSVQIPANS  60
DNVSYGTAKT PDNHLKRKFS STGGYPTSPN LENGSSGYSQ SSKPCPIAGE VFPSYEMAVQ  120
SYYDFASSTG FSVRLGLTHN ILDKETGQKI LVMKRLLCSK QGSPNLILPP TNGTGRKNGV  180
SRCGCLASIK FKRIDRSDKW ITDSVNLDHN HQFTTSSKIR YLPINRSISH TFKILFSSLA  240
DVNVPVSQQA AYFSNQLGGP ENMGCMTLDM NNMVRDDRID LKNYDVDLIV EDFKMKKLEN  300
AQFFYDLVKD DEGRLKHLFW DDPTMIENYK LFGDSVTFDR TYKTNVYSMV FGMFCGVNHQ  360
RKTTIFGSAF LSNENVDFFT WLFNTFKQCM GHPPQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PXI5	0.0	A0A0K9PXI5_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-39	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma145g00090.1