PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma144g00250.1
Common NameZOSMA_144G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bZIP
Protein Properties Length: 325aa    MW: 35422.4 Da    PI: 7.3455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma144g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.62.1e-16125176458
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       lkr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k l   ++  ++
  Zosma144g00250.1 125 LKRVRRMVSNRESARRSRRRKQAHLQDLESQVEQLRGENNSLYKHL---TDANQQ 176
                       79**************************************999555...444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-14122186IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.059124176IPR004827Basic-leucine zipper domain
PfamPF001706.9E-14125174IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-12126176No hitNo description
SuperFamilySSF579591.53E-12126176No hitNo description
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
PfamPF124987.8E-7193302IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKRNSSDWDL EAFLAHDGDF AAPNYGLMGN RNPVQNHMDG LVAAVGGGGA APWTTENQTP  60
KHSSISATIE SQSSICAGSP TSAMKPKLSR DAQAPGGGSS GSDSDEESYD IEAGSCEQGV  120
DVILLKRVRR MVSNRESARR SRRRKQAHLQ DLESQVEQLR GENNSLYKHL TDANQQFTDA  180
VTDNRVLKSD VETLRIKVKL AEDQVARGTL TCSLNHLLQT QTISTPPFPT TIASRGMCRA  240
SEMQVPTINT QGQGVSMPPI PDHGILHVDN NDIRTRLNQH NGNPMQQRMV NLEHLQNKIS  300
SDMTSCGGSD VWSRKLHANP MSNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138145RRSRRRKQ
2140145SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781732.12e-88bZIP transcription factor RISBZ4 isoform X1
SwissprotQ6H5002e-64RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0K9PXN00.0A0A0K9PXN0_ZOSMR; Transcription factor bZIP
STRINGXP_008781732.17e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-35basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]