PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma141g00040.1 | ||||||||
Common Name | ZOSMA_141G00040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | B3 | ||||||||
Protein Properties | Length: 596aa MW: 66928.5 Da PI: 6.5614 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.2 | 9.5e-16 | 34 | 116 | 11 | 99 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++ l++p + +++ +++ ++t ++ed+ g+sW+v++ + gr v+++GW+ Fvka+g++ g f+vF+++ + s+f vv++f+k Zosma141g00040.1 34 FET-KLIIPMEASRKIlNLV---NQTTSIEDSLGKSWNVEI--SEFEGRLVFQEGWEIFVKAHGIEFGNFLVFQYIVEkSSF--VVRIFEK 116 444.499******9997666...34899*************..*********************************765778..****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-17 | 20 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-18 | 21 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.507 | 23 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.54E-15 | 24 | 114 | No hit | No description |
SMART | SM01019 | 5.5E-9 | 26 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 33 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.49E-7 | 523 | 584 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-6 | 528 | 591 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.993 | 534 | 595 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MNHVECDACI VKCMTDHERS SGSFFFFTLM FKNFETKLII PMEASRKILN LVNQTTSIED 60 SLGKSWNVEI SEFEGRLVFQ EGWEIFVKAH GIEFGNFLVF QYIVEKSSFV VRIFEKSGCE 120 RLEFPSKSNS NGRNYTSKQK QGDDGDYCGL KSSIPNEDPT KVKNLNMEWN QVDNDGGGIN 180 ISIPKEDLAT HKKTDFKRKR DDDCGGFKSS IINEHLSKPQ KSNVHASGEA KLPKPIDYNH 240 LLESMKRPIY NSSKKMAENK QRQDDDIGDP KTSITNQDLT KIQKTNVDAS GQAKVPKKID 300 NNDLLEIMTC HLRMAQNLRS LQDDHDCIIV VEEDGTCHIY KQEPDSSIQF KSNASAGTIC 360 GDTFTMDGNN AARCIQPGSD MNFLNKFHEK PESTKQANPC KDSSAVDEIK NGNNDEIHIH 420 ATCDDVKSCN ITKSEKVDVE GGGGGNNICC SMGVDSAVKE NNDEHNKKEK SLAIVTTIKK 480 TESNLFLLVP VASSTNNDLS NRFIFRVTGN PHRPWLKLSE EPLPLPKKKE RKVVLFRDSK 540 LNVWPILYVE SKSFIGFLGG WQAFASTQDI QKGDLCSLNM ASEFYSLFDV RISRM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PXU0 | 0.0 | A0A0K9PXU0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12272 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma141g00040.1 |