PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma141g00040.1
Common NameZOSMA_141G00040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 596aa    MW: 66928.5 Da    PI: 6.5614
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma141g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-16341161199
                       HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       +++  l++p +  +++ +++   ++t ++ed+ g+sW+v++  +   gr v+++GW+ Fvka+g++ g f+vF+++ + s+f  vv++f+k
  Zosma141g00040.1  34 FET-KLIIPMEASRKIlNLV---NQTTSIEDSLGKSWNVEI--SEFEGRLVFQEGWEIFVKAHGIEFGNFLVFQYIVEkSSF--VVRIFEK 116
                       444.499******9997666...34899*************..*********************************765778..****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1720119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-1821119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.50723117IPR003340B3 DNA binding domain
CDDcd100172.54E-1524114No hitNo description
SMARTSM010195.5E-926117IPR003340B3 DNA binding domain
PfamPF023621.1E-1433116IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-7523584IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-6528591IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.993534595IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MNHVECDACI VKCMTDHERS SGSFFFFTLM FKNFETKLII PMEASRKILN LVNQTTSIED  60
SLGKSWNVEI SEFEGRLVFQ EGWEIFVKAH GIEFGNFLVF QYIVEKSSFV VRIFEKSGCE  120
RLEFPSKSNS NGRNYTSKQK QGDDGDYCGL KSSIPNEDPT KVKNLNMEWN QVDNDGGGIN  180
ISIPKEDLAT HKKTDFKRKR DDDCGGFKSS IINEHLSKPQ KSNVHASGEA KLPKPIDYNH  240
LLESMKRPIY NSSKKMAENK QRQDDDIGDP KTSITNQDLT KIQKTNVDAS GQAKVPKKID  300
NNDLLEIMTC HLRMAQNLRS LQDDHDCIIV VEEDGTCHIY KQEPDSSIQF KSNASAGTIC  360
GDTFTMDGNN AARCIQPGSD MNFLNKFHEK PESTKQANPC KDSSAVDEIK NGNNDEIHIH  420
ATCDDVKSCN ITKSEKVDVE GGGGGNNICC SMGVDSAVKE NNDEHNKKEK SLAIVTTIKK  480
TESNLFLLVP VASSTNNDLS NRFIFRVTGN PHRPWLKLSE EPLPLPKKKE RKVVLFRDSK  540
LNVWPILYVE SKSFIGFLGG WQAFASTQDI QKGDLCSLNM ASEFYSLFDV RISRM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PXU00.0A0A0K9PXU0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-08B3 family protein