PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma13g00870.1
Common NameZOSMA_13G00870
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 361aa    MW: 40830.6 Da    PI: 10.6977
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma13g00870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84e-32292349359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers edp+++++tYegeHnh+
  Zosma13g00870.1 292 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERSLEDPSMLIVTYEGEHNHT 349
                      9************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-18242288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33277349IPR003657WRKY domain
PROSITE profilePS5081130.377285348IPR003657WRKY domain
SuperFamilySSF1182905.89E-27288349IPR003657WRKY domain
SMARTSM007742.9E-39290350IPR003657WRKY domain
PfamPF031061.2E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEELEEANRS AINSFRRVLN LVSQEQQLQL QQNFGKNLLV ETGEAVSRFK KVVSLLGNGN  60
LGHGRVRLRR IHRRFPNPQH QKLFLEAPFP SPGTPSDQPL QKLLLLPRTP NQLPPKIFMD  120
YPFLEMDPSS RTSQFHHQHQ QQQQQKSIQM LQLQHQMKLQ EMYRRTSSNN NMSSSSSKSA  180
INLKFETSSC TPTLSSNMSF LSSLSMDGSV TKVDPKGGFQ LMGLPPQSSS ERIINPQQTC  240
SKKRCSGRGD DGSGKCGTSA GRCHCSKRRK LRVKRQIKVP AISNKLADIP PDEYSWRKYG  300
QKPIKGSPHP RGYYKCSSMR GCPARKHVER SLEDPSMLIV TYEGEHNHTR LLQTSHSTHT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-212863481071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805954.11e-124protein WRKY1-like isoform X1
SwissprotQ93WU68e-91WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A0K9PXV30.0A0A0K9PXV3_ZOSMR; WRKY transcription factor 25
STRINGXP_008805954.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.19e-71WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]