PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma136g00350.1
Common NameZOSMA_136G00350
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 92aa    MW: 10301.7 Da    PI: 8.5662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma136g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.6e-0719581554
                      HHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
               HLH 15 riNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                      +i + +++LrellP+    ++s++ +s + +L++++ +I sL
  Zosma136g00350.1 19 QISDLLFRLRELLPEvH--GRSGRrVSASKVLQETCTHIMSL 58
                      899************66..555555**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.76458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-51858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-71876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRRQSTN NGSRITDEQI SDLLFRLREL LPEVHGRSGR RVSASKVLQE TCTHIMSLHR  60
EVDDLSERLL ELLATTETSS AQAAIIRSLL L*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389574.14e-34PREDICTED: transcription factor ILI6-like
SwissprotB8APB51e-30ILI6_ORYSI; Transcription factor ILI6
SwissprotQ0DUR21e-30ILI6_ORYSJ; Transcription factor ILI6
TrEMBLA0A0K9Q0Q03e-56A0A0K9Q0Q0_ZOSMR; DNA binding protein
STRINGGSMUA_Achr2P07410_0012e-33(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-24bHLH family protein