PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma135g00350.1 | ||||||||
Common Name | ZOSMA_135G00350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | TCP | ||||||||
Protein Properties | Length: 283aa MW: 31668.2 Da PI: 6.8621 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.7 | 1.7e-41 | 87 | 219 | 4 | 134 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 ++drhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt++WLl++++ ai lt+ s s s+c ++ +++++++ + ++a + + Zosma135g00350.1 87 RRDRHSKIVTAKGPRDRRMRLSLDVAKKFFYLQDVLGFDKASKTVDWLLTKSNDAIRSLTSCASGSGSQCrSHLEEEEEEEGKIVDSAVITPT 179 89************************************************************9999999*64444444444444444444444 PP TCP 96 .kskksqksaasalnlakesrakarararertrekmrikn 134 ++ ++++a+s+ +l +esrakarararer re+ r k+ Zosma135g00350.1 180 gTKPLTNRKATSNPALVRESRAKARARARERARERTREKK 219 477777777788899999*********9999999988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.113 | 87 | 145 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.6E-36 | 87 | 219 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 11.872 | 197 | 218 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MFSAYTDRGF QFQTYDGNDA DHQHGGFDEL LLAIQLMPGA SSNLGQNISG PLRDPPSPPS 60 LPPPPQQEMQ EVQVVAGSGS GRKRGLRRDR HSKIVTAKGP RDRRMRLSLD VAKKFFYLQD 120 VLGFDKASKT VDWLLTKSND AIRSLTSCAS GSGSQCRSHL EEEEEEEGKI VDSAVITPTG 180 TKPLTNRKAT SNPALVRESR AKARARARER ARERTREKKI SMSMAIHHQH QHESSMNVDY 240 PLSFFQEFAG GNSCFHQQQQ QEKEEEEEEE EQEGGVLHPY FL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 217 | RARERARERTREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8LN68 | 2e-29 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A0K9PYP2 | 0.0 | A0A0K9PYP2_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-20 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Zosma135g00350.1 |