PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma133g00680.1
Common NameZOSMA_133G00680
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 576aa    MW: 64720.6 Da    PI: 4.6306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma133g00680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63.1e-33632031128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                       lp+G+rF+Ptd+el+ + L+k+ +         +e+ ++i+e+ +i++++P++Lp  vk++ +  +fF+++ ++y+tg+rk+r+++      +
  Zosma133g00680.1  63 LPKGVRFDPTDSELLLHLLAKSGKCGAnphpfiNEFITTIEECdGICYTHPQRLP-GVKQDGSASHFFHRTLRAYNTGTRKRRKIHngdhlgD 154
                       799************999999765555557774333345999966**********.677888999******************9663444436 PP

               NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        +W++tgk+k+v++ +g++ g+kk++v+y    +  k+ekt+Wvmh+y+l
  Zosma133g00680.1 155 VRWHKTGKTKPVIV-DGTQLGCKKIMVLYliVTKGGKAEKTNWVMHQYHL 203
                       67************.999***********7756777888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3748221IPR003441NAC domain
PROSITE profilePS5100530.86763221IPR003441NAC domain
PfamPF023651.3E-1464203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MGGQTWLIDG SIIATKIKNA SGTEPESCDL SRENRLQSNP TRDCPRCSYI IDNNNVSQKW  60
PGLPKGVRFD PTDSELLLHL LAKSGKCGAN PHPFINEFIT TIEECDGICY THPQRLPGVK  120
QDGSASHFFH RTLRAYNTGT RKRRKIHNGD HLGDVRWHKT GKTKPVIVDG TQLGCKKIMV  180
LYLIVTKGGK AEKTNWVMHQ YHLGTEEDET NEYVVSKVFC QQPPQSRQND INKLDPVTAN  240
RLKLEKLNCP ATEKRHQRLD SKYTADVASS DRELKTLGAE TVYDVENFDV CTDNVTLDDI  300
HADNIHLGNL SIVDDGKNRH VDENNHSQVA ESIDDVENYD VCTDNVSLDD IHADNIHLGN  360
SSIVNDGENR HIDENNLFQV AETIKDVKNY DVCTDDVALD DIHAVDIDEN RHVGDNADGC  420
EDNSHSQEFS PFDSKNIWDT EELAVAGEDL FNSQPFLAYY ARLGGAEHLR SDLEECKRLN  480
SIDKLSSECR LKGDQEECKR LICIDDQEDI VLDAPHSDLI CIGDNKPPSD CQKIDSDLEE  540
FKRLICIDNQ DFAPSDKEMR LSQLVFSSDD SVLGW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZ820.0A0A0K9PZ82_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.14e-98NAC family protein