PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma12g00160.1
Common NameZOSMA_12G00160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 314aa    MW: 34959.6 Da    PI: 7.1881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma12g00160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-056789123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ Cg+ F++   L  H+++H
  Zosma12g00160.1 67 YSCSFCGREFKSAQALGGHMNVH 89
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-66493No hitNo description
Gene3DG3DSA:3.30.160.603.7E-46591IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.2E-66790IPR007087Zinc finger, C2H2
SMARTSM003550.00176789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1546794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEKNRYWSSM PSMWAGRKFS TGMPQIYPFP STSTAAVASN YDSWEEQAFA EDSAGGLGGC  60
VWPPRSYSCS FCGREFKSAQ ALGGHMNVHR RDRARLKQSS PPPSPLPPPQ PPTITTTTAT  120
FHDHKRNHYR RPFHRLYSSQ VRQQVGNPNP NPNLMLATNK HQLENSKEKM ITSNSTTTTA  180
TTNSTNHLSF SLQYLRTAAP QITKPPSTIF GWKLGGDPEL KRKRSDEEEE STVNDDQKRQ  240
RTTTSSTTSI YNNIIPGSTA HVSEGTGLLS FLDPEIHPNH DHEEQDPDEP ELDLELRLGN  300
HPVAAENCSE VLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-126289229superman protein
2l1o_A8e-126289229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q1D30.0A0A0K9Q1D3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-27C2H2 family protein