PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma127g00120.1 | ||||||||
Common Name | ZOSMA_127G00120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | B3 | ||||||||
Protein Properties | Length: 536aa MW: 62161.8 Da PI: 9.9666 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.2e-13 | 10 | 100 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkvl d ++++ l++p kf++++ + ++ ++ l + g+ W v++ r++s++ y+ ++GW eFv++++L g f+vF +++ +f Zosma127g00120.1 10 FFKVL--LDGFNEK-LRIPDKFVSSFFRE--QG-KVNLCSsILGKIWCVEI--RQHSDGlYFSGDGWIEFVQDHDLHFGYFLVFVCHQNINF- 93 88999..8999887.********999644..33.466666599********..99999988889*********************6665444. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +vk f++ Zosma127g00120.1 94 -FVKSFDH 100 .7887776 PP | |||||||
2 | B3 | 36 | 1.2e-11 | 286 | 374 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 f+k + +s+ k+ +++p +f +++ +++ +++l++ +g W vk+++ rk++ ++++GW+ F +n+LkegD+++F+l+++ Zosma127g00120.1 286 FKKSMARSYIYKNF-MSFPSSFRDANnlfDIN-----EVILTNNNG-CWAVKFCHcfRKNGILySFFSGGWSVFKLENNLKEGDVCIFELSST 371 66666666666665.*******9999554433.....799988776.588888773355544477899*********************9987 PP .SE CS B3 88 .se 89 ++ Zosma127g00120.1 372 yEN 374 443 PP | |||||||
3 | B3 | 34.2 | 4.4e-11 | 435 | 526 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 k+ +++ + ++ l +p f +++++++ + +++l++++g W vk+ y +++ r v+++GW F ++n+Lk gD++ F+l++++e Zosma127g00120.1 435 KINMTHTSINN-YLHFPQAFRDANNLSTIN--EVILTNTNG-YWPVKF-YqrisrKNGYVRSVFSSGWVIFTRENNLKIGDVCCFELSSTNES 522 55666666655.5999****9999888544..799999777.577777.32332244444499***********************9987555 PP ..EE CS B3 91 elvv 94 + + Zosma127g00120.1 523 KAIF 526 5554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-14 | 6 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.602 | 7 | 101 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-16 | 9 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.4E-11 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-10 | 10 | 100 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.24E-10 | 10 | 85 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-14 | 282 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-13 | 282 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-10 | 284 | 381 | No hit | No description |
PROSITE profile | PS50863 | 10.066 | 285 | 384 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-8 | 286 | 377 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-9 | 286 | 375 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-13 | 429 | 528 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-12 | 430 | 520 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.616 | 432 | 532 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.01E-8 | 432 | 530 | No hit | No description |
SMART | SM01019 | 1.2E-4 | 433 | 532 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-8 | 435 | 526 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MIDVGETNEF FKVLLDGFNE KLRIPDKFVS SFFREQGKVN LCSSILGKIW CVEIRQHSDG 60 LYFSGDGWIE FVQDHDLHFG YFLVFVCHQN INFFVKSFDH SGCRKLYTPI NDHVEQSNFS 120 EERNNLSEAR CAAFTRENNF KEGDVCNFKL VSRVDLSVKE ENSNVPGRNI TQRGRNKSET 180 VTLKPKVMKK EKTNVEKFLK AMKKPQFKIS TQPSYIDKKL MHFADRFHDT DINETTCSTT 240 DERFSAKFRK EGDSSFSRRN FSRKTTGDQL KKSVANILNV IKKPQFKKSM ARSYIYKNFM 300 SFPSSFRDAN NLFDINEVIL TNNNGCWAVK FCHCFRKNGI LYSFFSGGWS VFKLENNLKE 360 GDVCIFELSS TYENRANFIV TKEMNLSRNY DHSNVSRQKK CRKVNISETT TLKLMATKKR 420 IVEKSLKVKQ KPNFKINMTH TSINNYLHFP QAFRDANNLS TINEVILTNT NGYWPVKFYQ 480 RISRKNGYVR SVFSSGWVIF TRENNLKIGD VCCFELSSTN ESKAIFSVTK LSAFD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PZN8 | 0.0 | A0A0K9PZN8_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma127g00120.1 |