PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma127g00120.1
Common NameZOSMA_127G00120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 536aa    MW: 62161.8 Da    PI: 9.9666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma127g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-1310100199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       ffkvl   d ++++ l++p kf++++  +  ++ ++ l +   g+ W v++  r++s++ y+ ++GW eFv++++L  g f+vF  +++ +f 
  Zosma127g00120.1  10 FFKVL--LDGFNEK-LRIPDKFVSSFFRE--QG-KVNLCSsILGKIWCVEI--RQHSDGlYFSGDGWIEFVQDHDLHFGYFLVFVCHQNINF- 93 
                       88999..8999887.********999644..33.466666599********..99999988889*********************6665444. PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                        +vk f++
  Zosma127g00120.1  94 -FVKSFDH 100
                       .7887776 PP

2B3361.2e-11286374189
                       EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k + +s+  k+  +++p +f +++   +++     +++l++ +g  W vk+++  rk++    ++++GW+ F  +n+LkegD+++F+l+++
  Zosma127g00120.1 286 FKKSMARSYIYKNF-MSFPSSFRDANnlfDIN-----EVILTNNNG-CWAVKFCHcfRKNGILySFFSGGWSVFKLENNLKEGDVCIFELSST 371
                       66666666666665.*******9999554433.....799988776.588888773355544477899*********************9987 PP

                       .SE CS
                B3  88 .se 89 
                        ++
  Zosma127g00120.1 372 yEN 374
                       443 PP

3B334.24.4e-11435526394
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       k+ +++ + ++  l +p  f +++++++ +  +++l++++g  W vk+ y     +++  r v+++GW  F ++n+Lk gD++ F+l++++e 
  Zosma127g00120.1 435 KINMTHTSINN-YLHFPQAFRDANNLSTIN--EVILTNTNG-YWPVKF-YqrisrKNGYVRSVFSSGWVIFTRENNLKIGDVCCFELSSTNES 522
                       55666666655.5999****9999888544..799999777.577777.32332244444499***********************9987555 PP

                       ..EE CS
                B3  91 elvv 94 
                       +  +
  Zosma127g00120.1 523 KAIF 526
                       5554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-146103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.6027101IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-169103IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-1110101IPR003340B3 DNA binding domain
PfamPF023623.7E-1010100IPR003340B3 DNA binding domain
CDDcd100171.24E-101085No hitNo description
Gene3DG3DSA:2.40.330.109.4E-14282372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-13282372IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-10284381No hitNo description
PROSITE profilePS5086310.066285384IPR003340B3 DNA binding domain
SMARTSM010199.0E-8286377IPR003340B3 DNA binding domain
PfamPF023622.1E-9286375IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13429528IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-12430520IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.616432532IPR003340B3 DNA binding domain
CDDcd100171.01E-8432530No hitNo description
SMARTSM010191.2E-4433532IPR003340B3 DNA binding domain
PfamPF023621.2E-8435526IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MIDVGETNEF FKVLLDGFNE KLRIPDKFVS SFFREQGKVN LCSSILGKIW CVEIRQHSDG  60
LYFSGDGWIE FVQDHDLHFG YFLVFVCHQN INFFVKSFDH SGCRKLYTPI NDHVEQSNFS  120
EERNNLSEAR CAAFTRENNF KEGDVCNFKL VSRVDLSVKE ENSNVPGRNI TQRGRNKSET  180
VTLKPKVMKK EKTNVEKFLK AMKKPQFKIS TQPSYIDKKL MHFADRFHDT DINETTCSTT  240
DERFSAKFRK EGDSSFSRRN FSRKTTGDQL KKSVANILNV IKKPQFKKSM ARSYIYKNFM  300
SFPSSFRDAN NLFDINEVIL TNNNGCWAVK FCHCFRKNGI LYSFFSGGWS VFKLENNLKE  360
GDVCIFELSS TYENRANFIV TKEMNLSRNY DHSNVSRQKK CRKVNISETT TLKLMATKKR  420
IVEKSLKVKQ KPNFKINMTH TSINNYLHFP QAFRDANNLS TINEVILTNT NGYWPVKFYQ  480
RISRKNGYVR SVFSSGWVIF TRENNLKIGD VCCFELSSTN ESKAIFSVTK LSAFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZN80.0A0A0K9PZN8_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein