PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma123g00440.1
Common NameZOSMA_123G00440
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 526aa    MW: 58741.4 Da    PI: 5.0332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma123g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12306349755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + E++RR ++N +++ L++l+P++      K + a+i+  A++YI++Lq
  Zosma123g00440.1 306 ATEKQRRVQMNGKYDVLKSLIPNL-----SKTDRASIVMGAIDYIQELQ 349
                       78*********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.26E-11294352No hitNo description
PROSITE profilePS5088813.224299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-10305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-12306357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-13306363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9306349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MYEESGYYDP NPIPALLDGL TQDATSINST GNILDTTNLI RTSTFSLEEF AHSTDHEPNC  60
NVSAMGGLES LQHHLGFDLE QEIHSHLIHP DMPMPMMSLD NATSWDQNTH QDLGQLPHYM  120
VNTDVQQQLD HHFPLQTQDP AQCYDTAPLP NYTTDPTPYT SSTPPPDLLN LLHLPRYTVA  180
PPILPSLQQT PLLPTDIARN NNCYPLDIFG GSGDIPIGED GGTMLQMGYH PPLPHHQNNL  240
LRDLFHSLPQ NYGVYSGAVD EGDAGGGGGG GGGMSVFQED MNIGRYDKNP VFDYRREVKV  300
EKGTFATEKQ RRVQMNGKYD VLKSLIPNLS KTDRASIVMG AIDYIQELQR TVTELKLLIE  360
KKRYGRNNKR SKIEMSMDPT VITPSSNDII ESSSVIRHLA GSDDNNIIIN KDLLFNDTLR  420
SSWLQRESRE TFIDVRIVDD EVNLKMTQKK KMNCLLIAVK ALDELQLDIV HVSAGFIGER  480
YVFLFNTKIF EGSPVYASAI AKKMLEVMEK PYVPSPSKIT ARVLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q0940.0A0A0K9Q094_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-57bHLH family protein