PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma123g00250.1
Common NameZOSMA_123G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 849aa    MW: 94582.2 Da    PI: 6.3317
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma123g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-20137192156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t+ q++e+e++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Zosma123g00250.1 137 KKRYHRHTARQIQEMEAMFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 192
                       688899***********************************************998 PP
2START142.15.4e-453465742206
                       HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
             START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                       la + a++lv++   +ep+Wv+ s  ++++ +e++++f+   +          +++e  r+ g+v m++ +lve +ld++ +W e ++     
  Zosma123g00250.1 346 LAVSSADQLVRMCRTNEPLWVRNSsgDKLDLEEYRRIFPAWSNnkqeqqmekvFRVESTRDNGHVMMNSITLVEAFLDVS-KWMELFPsivsN 437
                       678899******************9*************8766688999********************************.*******9999* PP

                       EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEE CS
             START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghs 162
                       a+tl+vi++g      g lqlm+ae+q+lsplvp R+  f Ry+    ++g wvivd   d  q+      ++v  +++pSg+++++++ng+s
  Zosma123g00250.1 438 AKTLQVITPGisasgnGSLQLMYAEFQVLSPLVPtRETCFFRYCHHnIEDGYWVIVDFPADGFQEGYHqPTGSVHYKRRPSGFIFQDMPNGYS 530
                       *********************************************************9999888877667799******************** PP

                       EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        vtwvehv+ ++r +h ++   +++gla+ga++wva lq+qc +
  Zosma123g00250.1 531 MVTWVEHVEIEDRGVHHIFDEYIGNGLAFGASRWVAVLQHQCNR 574
                       ******************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.8E-19126195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-22134199IPR009057Homeodomain-like
PROSITE profilePS5007117.216134194IPR001356Homeobox domain
SMARTSM003891.0E-19135198IPR001356Homeobox domain
PfamPF000466.2E-18137192IPR001356Homeobox domain
CDDcd000863.91E-19137195No hitNo description
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
PROSITE profilePS5084838.472336577IPR002913START domain
SuperFamilySSF559618.38E-27337576No hitNo description
CDDcd088752.99E-99340572No hitNo description
SMARTSM002341.9E-35345574IPR002913START domain
PfamPF018525.8E-38346573IPR002913START domain
SuperFamilySSF559612.2E-15603824No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MYGDCQVMKQ SSSSMMMGVG GENMVGMSMN IPMPMSMNMS MNLSDPVLFP PNPNHLTSFM  60
AGMPPFHSFS SIIPKEEVGM MRKEEEIESG SGSGQIEGLS CGEEHDTNDR HLHQQEQQIL  120
DQQDQNPHQL LDSSGKKKRY HRHTARQIQE MEAMFKECPH PDDKQRMRLS QELGLKPRQV  180
KFWFQNRRTQ MKAQQDRSDN VILRAENESL KTENFRLQAA MPNVICPNCG SPAILGEMSL  240
DEQHLRLENA RLKEELERLS CMAPRYGGGR PMHHPAPSLG PAPPPMMLPS LDLDMGVYSR  300
HFGDLHSDMI SLSPPPMTSV PYQTHFSDDI GGSFVRDLDK PVVLELAVSS ADQLVRMCRT  360
NEPLWVRNSS GDKLDLEEYR RIFPAWSNNK QEQQMEKVFR VESTRDNGHV MMNSITLVEA  420
FLDVSKWMEL FPSIVSNAKT LQVITPGISA SGNGSLQLMY AEFQVLSPLV PTRETCFFRY  480
CHHNIEDGYW VIVDFPADGF QEGYHQPTGS VHYKRRPSGF IFQDMPNGYS MVTWVEHVEI  540
EDRGVHHIFD EYIGNGLAFG ASRWVAVLQH QCNRLASLMA RNVSDLGVIP SPKARKNMMK  600
LSQRMIRTFC SNLSSYESRH PWTALSDSSN DTIRIKTRKN TEPGQPNGVI LTSVSTTWMP  660
FSHLQVFELL TDEQRRSQLD ILSSGSSLHE VAHIANGSHQ KNCVSLFRIN ASSNSSQNVE  720
LMLQESNTHP TGGSLVVYTT IDVDAVQVAM SGEDPSYIPL LPAGFVVIPA TPPSNYTGPE  780
SNSTNGCLLT VGLQVLASAV STAKLNLSSV TAINNHLCNV VNQIITALGG SSMHADSSAV  840
ATASLTEH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919976.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0K9Q2G00.0A0A0K9Q2G0_ZOSMR; Homeobox-leucine zipper protein ROC3
STRINGXP_010245210.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7