PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma122g00040.1 | ||||||||
Common Name | ZOSMA_122G00040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | AP2 | ||||||||
Protein Properties | Length: 331aa MW: 37633.8 Da PI: 8.7476 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.4 | 4.7e-15 | 54 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d +n+ k+ k+++lg ++ ++ Aa+a++ a++k++ Zosma122g00040.1 54 SIYRGVTRHRWTGRFEAHLWDkNGWNQsqnKKgKQVYLGAYDDEKAAARAYDLAALKYWT 113 57*******************666677766447**********99************975 PP | |||||||
2 | AP2 | 54.1 | 4e-17 | 156 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+++lg+f t+eeAaka++ a+ +++g Zosma122g00040.1 156 SKYRGVARHHHNGRWEARIGRvF---G-KKYHYLGTFATEEEAAKAYDVAAIEYRG 207 89****99**********99967...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-11 | 54 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-16 | 54 | 122 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-14 | 55 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-22 | 55 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.216 | 55 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 56 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.01E-25 | 156 | 217 | No hit | No description |
Pfam | PF00847 | 4.3E-12 | 156 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-18 | 156 | 217 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.492 | 157 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-19 | 157 | 216 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-25 | 157 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 197 | 217 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:1904278 | Biological Process | positive regulation of wax biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAKVSSSSKN GSSSVTVSKE NGRNTKPVNK TNKKKKRQMN SVSMVSVSQT QRSSIYRGVT 60 RHRWTGRFEA HLWDKNGWNQ SQNKKGKQVY LGAYDDEKAA ARAYDLAALK YWTQATLLNF 120 PVKEYQNEIK EMEGQSLEEY IGSIRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGK 180 KYHYLGTFAT EEEAAKAYDV AAIEYRGMNA ITNFDTSCYI SSPHSIPTTN DPDSSPNQYP 240 ISTDMAHKIE TNLHHDVLLM DDTNTVMNTT VVANEGYRIP LNSSSRCSFP DDVQTYFECD 300 RDVEEDNEDN VLFSELRSFC PAIFQYHHDI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051280.1 | 1e-115 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Refseq | XP_028051281.1 | 1e-115 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-92 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0K9Q2M1 | 0.0 | A0A0K9Q2M1_ZOSMR; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_008223596.1 | 1e-112 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 2e-86 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma122g00040.1 |
Publications ? help Back to Top | |||
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