PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma121g00740.1

Common Name

ZOSMA_121G00740

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 427aa MW: 48204.6 Da PI: 8.8044

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma121g00740.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.9e-17	177	269	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA+ GFsvr +++++ + ++ ++r++ C k+gk + + + ++r+++a+ r+gC a++k+k+e +++w v++++leHnH+l+ Zosma121g00740.1 177 YYGYASIGGFSVRLGSTNYNtskvDGKKLLVMRRLLCFKKGKVDLLQPVKLSKRHKNAVLRCGCYASVKIKREAmSEEWIVKNIVLEHNHPLT 269 899********9888777564445566899********99998899******************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-14	177	269	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MLLINHHIYH NLTLSPKTPF ISLLILSQYI SYHPHIYRPL HAQPLNTPTK HPRPQCNVSL 60 DFYSIQSEKS SGCNPNDTYG NAEYSRNNDF PLISNATYGP HECNDISLDN GQTPISSKTN 120 DVTRLRNANN SSDDASPSFF IHKQPTDTNA SSGSVKVNSP PFVGQIFSSY SDALDQYYGY 180 ASIGGFSVRL GSTNYNTSKV DGKKLLVMRR LLCFKKGKVD LLQPVKLSKR HKNAVLRCGC 240 YASVKIKREA MSEEWIVKNI VLEHNHPLTT PSKVRFLSIN RSILSTSRLL FNSPSEVNVP 300 VSQQTAYFSS QVGGIEHMRC IQLDISNLGR DDRVDFKNYD VNLLVEEFEL KKSVQPDFFS 360 IVEDSTGRLK HVFWDDSIMI QHFKLLGDAV TFDTTYKTNV YSLIFEIFCG VNHHRNTVIF 420 GSAFLR*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MLLINHHIYH NLTLSPKTPF ISLLILSQYI SYHPHIYRPL HAQPLNTPTK HPRPQCNVSL  60
DFYSIQSEKS SGCNPNDTYG NAEYSRNNDF PLISNATYGP HECNDISLDN GQTPISSKTN  120
DVTRLRNANN SSDDASPSFF IHKQPTDTNA SSGSVKVNSP PFVGQIFSSY SDALDQYYGY  180
ASIGGFSVRL GSTNYNTSKV DGKKLLVMRR LLCFKKGKVD LLQPVKLSKR HKNAVLRCGC  240
YASVKIKREA MSEEWIVKNI VLEHNHPLTT PSKVRFLSIN RSILSTSRLL FNSPSEVNVP  300
VSQQTAYFSS QVGGIEHMRC IQLDISNLGR DDRVDFKNYD VNLLVEEFEL KKSVQPDFFS  360
IVEDSTGRLK HVFWDDSIMI QHFKLLGDAV TFDTTYKTNV YSLIFEIFCG VNHHRNTVIF  420
GSAFLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q0S6	0.0	A0A0K9Q0S6_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-30	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma121g00740.1