PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma120g00700.1
Common NameZOSMA_120G00700
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 485aa    MW: 54910.2 Da    PI: 8.4887
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma120g00700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.52.1e-19953145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      kr en   rqvtfskRr+gi KKA ELS+LCd++ a+++f + gk
  Zosma120g00700.1  9 KRLENAGGRQVTFSKRRAGIVKKATELSILCDIDLALLMFPPAGK 53
                      6889999*********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.137153IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-23292IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171253IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGRAKLKIKR LENAGGRQVT FSKRRAGIVK KATELSILCD IDLALLMFPP AGKAILCLGE  60
NSTMDQVLHK FSQQTPQERA KRKLESLEIY QTMMKVLKKT FKKLDHDVNI QDFVGSSFWV  120
KPESVDKLEH ITRIEDYLRH ALNDLDAQKE MCDRINFANM EGSSSNQFQG GMQSILMAAQ  180
PPMPWIQNNA QHTNKLPNVT SHNVYLAAQN DTHVPRPMQN STPLDHKDTY KYSIDPANME  240
GSSSNQFQGG MQSMHMSAAQ PPMPWIQNNA QYTILNVQHN MQLPHVTNHN FPLAAQNDIH  300
VPRPMQNKTP LDHKDISRYN IHPANMEGSS SNLFQGGMQS MHMAAQPPMP WIQNNAQHTM  360
LNVEHTMLLP NVTNHNFPLA AQNDTHVPRP MQNNTPRPMQ NNTPRPMQNN TPRPIKNNTP  420
LDHKDTSRYN IDLVNFSDFF GINTQDYQLD GSSQVETAVM NLNEMGHHQH SMNMQQQLGG  480
GQHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3810.0A0A0K9Q381_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46263659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.24e-53AGAMOUS-like 30