PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma120g00020.1

Common Name

ZOSMA_120G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 370aa MW: 41299.7 Da PI: 6.3001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma120g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	305	350	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k ++ +++L +Ave+Ik+Lq Zosma120g00020.1 305 SIAERVRRTKISERMRKLQELVPNM----DKQMNTSDMLDLAVEHIKDLQ 350 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.545	299	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-15	302	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-10	303	354	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-14	304	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-11	305	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-9	305	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MYGSKDLNLS FTVSSGSDNQ DKEESNLFPR QNQNHHRMSS ELVEYPPHPA HRSAVPETES 60 MFARFMADKP PLEQRRSQLL MPLKATRSER ELEHSSSNLR MLFQSPQQLQ TLHSESPYSV 120 TAAEVEEEEG EEEETRRGVG VGASSNLVQQ RSTPAGFFSP LNVDSVSSGF NMIRGLEEEH 180 DGGGESSSGR LKGQLSFSSR QGSDKGDGTN NVSTTASGSG RCNYIPGYPV SSWEDSVFLS 240 DNLSGGKRPQ WHPSDQSAGL EMRDHRVSDL SSSESNPVME RYLEFQDAVP CKIRAKRGCA 300 THPRSIAERV RRTKISERMR KLQELVPNMD KQMNTSDMLD LAVEHIKDLQ KTIKTLSDDR 360 GRCRCEQKT*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MYGSKDLNLS FTVSSGSDNQ DKEESNLFPR QNQNHHRMSS ELVEYPPHPA HRSAVPETES  60
MFARFMADKP PLEQRRSQLL MPLKATRSER ELEHSSSNLR MLFQSPQQLQ TLHSESPYSV  120
TAAEVEEEEG EEEETRRGVG VGASSNLVQQ RSTPAGFFSP LNVDSVSSGF NMIRGLEEEH  180
DGGGESSSGR LKGQLSFSSR QGSDKGDGTN NVSTTASGSG RCNYIPGYPV SSWEDSVFLS  240
DNLSGGKRPQ WHPSDQSAGL EMRDHRVSDL SSSESNPVME RYLEFQDAVP CKIRAKRGCA  300
THPRSIAERV RRTKISERMR KLQELVPNMD KQMNTSDMLD LAVEHIKDLQ KTIKTLSDDR  360
GRCRCEQKT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776552.1	1e-84	transcription factor bHLH130-like
Swissprot	Q66GR3	9e-49	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0K9Q330	0.0	A0A0K9Q330_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRING	XP_008776552.1	5e-84	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma120g00020.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]