PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma11g01280.1
Common NameZOSMA_11G01280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 204aa    MW: 23662.5 Da    PI: 10.4932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma11g01280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18857255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta +Aa+a++aa++ ++g
  Zosma11g01280.1  8 HYRGVRKRP-WGRYAAEIRDPRK---KARVWLGTFDTAIQAAQAYDAAARDFRG 57
                     6********.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.36E-19867No hitNo description
PfamPF008471.0E-12857IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-31866IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20866IPR016177DNA-binding domain
PROSITE profilePS5103222.866865IPR001471AP2/ERF domain
SMARTSM003807.1E-34871IPR001471AP2/ERF domain
PRINTSPR003675.7E-10920IPR001471AP2/ERF domain
PRINTSPR003675.7E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVQKKEVHYR GVRKRPWGRY AAEIRDPRKK ARVWLGTFDT AIQAAQAYDA AARDFRGSKA  60
KTNFADQSSL VNNNTTPTDH RSLQLSYPIP LPLFKQINPP WERYLVDPQQ QQQLQQQTDG  120
SRNIPNLHPF LEAVEEREDK QVGNLNSDSD LDLDLNLNLR SSNQTHTADV NNKNNNNNKK  180
KEKEIRFFRF LSFQAILNLR FKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20564262ATERF1
3gcc_A9e-20564262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q1R61e-147A0A0K9Q1R6_ZOSMR; Ethylene-responsive transcription factor 9
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9