PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma11g00210.1
Common NameZOSMA_11G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 373aa    MW: 40867.3 Da    PI: 5.0649
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma11g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.51.5e-2219122174
         trihelix   1 rWtkqevlaLiearremeerlr.rgk.............................lkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                      rWt+qe+l+Li++++  e+r r rg+                               +p+W++vs+++++rg++r+p+qC+++w+nl+++ykki
  Zosma11g00210.1  19 RWTRQEILVLIQGKKVAESRGRgRGRlgssrlqqmgssssdgggeglpvvirgasTVEPKWASVSSYCSRRGVNRGPVQCRKRWSNLAGDYKKI 112
                      8**************999999843436667788888899999999999999999899************************************* PP

         trihelix  65 kegekkrtse 74 
                      ke+e k++se
  Zosma11g00210.1 113 KEWELKKRSE 122
                      ****987554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-1019121No hitNo description
Gene3DG3DSA:1.10.10.602.7E-419105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MENAVTSNGG GARPPRLPRW TRQEILVLIQ GKKVAESRGR GRGRLGSSRL QQMGSSSSDG  60
GGEGLPVVIR GASTVEPKWA SVSSYCSRRG VNRGPVQCRK RWSNLAGDYK KIKEWELKKR  120
SEGEGGGDDE KESFWVMRND LRRERKLPGF FDREVFDILD GKEVEPPPIK EGVGRVGGDS  180
KQDGDGVVGG SGTAGREITV VEEEDEEKEE AEAEAAVFDS GRTTADDGLF SDSNEDDKDK  240
DDGRSSPLPI PSGVPVAVTP ISERKFDPSF ISGSEKDRGK EKSSEREERT TGGRKRQRPS  300
GASEETSGEK ENILQQQLVE ILDRNSRMMT EQLEAQNMNC RLDREQRADM ARSVVEVLGK  360
LAEAIGKIAE KL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249232.19e-98PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A0K9Q3F80.0A0A0K9Q3F8_ZOSMR; Uncharacterized protein
STRINGXP_010249232.14e-97(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-51Trihelix family protein