PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma11g00130.1
Common NameZOSMA_11G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 320aa    MW: 36401.8 Da    PI: 7.9334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma11g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09182229455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Zosma11g00130.1 182 SHSLAERVRREKISERMKHLQGLVPGC----DKVIGKAIILDEIINYVQSLQ 229
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.57E-10176233No hitNo description
SuperFamilySSF474591.96E-16176241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16178240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.25178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-7182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-10184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MARHVIRSTL VSGYHLQSPP MAAFTLQNCQ IPFLDTAYIT AATINATPAL DLTTTTTTMA  60
AVSSSSSPPP FFHPYYSPLQ PQQQCEPINT TVDSCSSLEK SRTKTTVAER KEKEKEKKRR  120
KKFNRKPTDS NVLKRRRRSR KKCGGGHDDD DDDDDDSKEN EEEKAPTDYI HVRARRGQAT  180
DSHSLAERVR REKISERMKH LQGLVPGCDK VIGKAIILDE IINYVQSLQN QVEFLSMRLA  240
SVTPSELLES NLDMNEYLAS QPRNQIEPTF FMDGVFPPVD SSSSFPFLMH GQESYGDRQR  300
FLRPHQQFQF QFNDFSTFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109126RKEKEKEKKRRKKFNRKP
2110121KEKEKEKKRRKK
3112121KEKEKKRRKK
4116120KKRRK
5116121KKRRKK
6119137RKKFNRKPTDSNVLKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3930.0A0A0K9Q393_ZOSMR; Uncharacterized protein
STRINGXP_010250560.15e-46(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-44bHLH family protein